PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON55520.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

bHLH

Protein Properties

Length: 549aa MW: 60317.2 Da PI: 6.4335

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON55520.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.3	4.4e-16	341	387	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq PON55520.1 341 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 387 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 549 aa Download sequence
MNHCVPDFEM EDEYSIPTTS GLACPKKSFL PEEDIMELLW QNGQVIAQSQ NQRSVMRKSS 60 PPSSKYDAVI PADMEISSSQ GQVHDHHHHH HQHQHQQQQQ HLFMQEDEMA SWLHYPLVDD 120 PSLEHNFSAD LLYPPPSETT TTTTSTPALR HTHFSEVRPP VTMADMPVQA SSRQPVPPPA 180 RTEVQNFVHF SRHNNNSSSK ARDESGPSCS KSAVRQLSTT VVDSCDTPAV GPNSRVSEIG 240 RRSSPGETSY GNLGSGYISG GGGKEAVRCE GTMTSSPGDS SASAEPSPAT KSTAAGEDRK 300 RKGVEPDDTE CQSEDAEFES GDAKKQARGT ASTKRSRAAE VHNLSERRRR DRINEKMKAL 360 QELIPRCNKS DKASMLDEAI EYLKSLQLQV QMMSMGCGMV PMMFPGIQQY MPPMGMGIGM 420 GMGMGMEMGM NRPIMPFPNV LTGSAITAPA AAAHLGPRFP MPAFHMPPVP TTETSRAQAT 480 NQPEYMFQSF ATQNPNQSRI PNFSDPYQQY LGSHQIQLPL QQNQAMVQPS TSKPSTSRGP 540 ENPENHQSG

Sequence ? help Back to Top

Protein Sequence Length: 549 aa Download sequence

MNHCVPDFEM EDEYSIPTTS GLACPKKSFL PEEDIMELLW QNGQVIAQSQ NQRSVMRKSS  60
PPSSKYDAVI PADMEISSSQ GQVHDHHHHH HQHQHQQQQQ HLFMQEDEMA SWLHYPLVDD  120
PSLEHNFSAD LLYPPPSETT TTTTSTPALR HTHFSEVRPP VTMADMPVQA SSRQPVPPPA  180
RTEVQNFVHF SRHNNNSSSK ARDESGPSCS KSAVRQLSTT VVDSCDTPAV GPNSRVSEIG  240
RRSSPGETSY GNLGSGYISG GGGKEAVRCE GTMTSSPGDS SASAEPSPAT KSTAAGEDRK  300
RKGVEPDDTE CQSEDAEFES GDAKKQARGT ASTKRSRAAE VHNLSERRRR DRINEKMKAL  360
QELIPRCNKS DKASMLDEAI EYLKSLQLQV QMMSMGCGMV PMMFPGIQQY MPPMGMGIGM  420
GMGMGMEMGM NRPIMPFPNV LTGSAITAPA AAAHLGPRFP MPAFHMPPVP TTETSRAQAT  480
NQPEYMFQSF ATQNPNQSRI PNFSDPYQQY LGSHQIQLPL QQNQAMVQPS TSKPSTSRGP  540
ENPENHQSG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	346	351	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.2	2e-72	bHLH family protein