PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON55475.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

MYB

Protein Properties

Length: 278aa MW: 31725 Da PI: 10.1229

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON55475.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.3	1.3e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++q+G +W++ +r g+ R++k+c++rw +yl PON55475.1 14 KGPWSPEEDRILISYIQQFGHANWRALPRQAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	57.6	2.8e-18	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE+e ++++++ lG++ W++Ia++++ gRt++++k++w+++l PON55475.1 67 RGNFSKEEEETIIKLHQILGNR-WSSIAAKLP-GRTDNEVKNFWHTHL 112 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence
MVRTPCCEEM GLKKGPWSPE EDRILISYIQ QFGHANWRAL PRQAGLQRCG KSCRLRWTNY 60 LRPDIKRGNF SKEEEETIIK LHQILGNRWS SIAAKLPGRT DNEVKNFWHT HLKKKLQRSN 120 TSMNNSTSTP VQKISQSTST STGIMAVQPQ IVMSHIEEPS SHTKEETTVR TIPRSTRNVI 180 SIDHDYGNKY FMLKEAKIKC STTSTSTSTT TTPLFDPRLQ IISFNSKSSM DQYTMKKGSS 240 NDNNGLTSKN EDMDFWYNLF VKAGESTPRP LKTLDALL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	8e-72	MYB family protein