PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON54964.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

SBP

Protein Properties

Length: 344aa MW: 37935.4 Da PI: 8.6825

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON54964.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.1	1.9e-41	41	117	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrhkvCevhsk+p+v++ g+eqrfCqqCsrfh+l efDeekrsCr+rL++hn+rrrk+q+ PON54964.1 41 CLVDGCNSDLSKCRDYHRRHKVCEVHSKTPKVTIGGREQRFCQQCSRFHSLVEFDEEKRSCRKRLDGHNRRRRKPQP 117 **************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MEDGSKIEWK DLGTLDMESS SSSMPLKRTR GHSNGIQVPS CLVDGCNSDL SKCRDYHRRH 60 KVCEVHSKTP KVTIGGREQR FCQQCSRFHS LVEFDEEKRS CRKRLDGHNR RRRKPQPEPM 120 SISSGRFLSS YQGPRFSPFH SPQAFPSAAM NSALAMAGAA KSESDVVLDK IHSQFSVTRE 180 NPFPGSLNHS YTGGKEISFL QSPSCTLPEA SSVSQSFMDS SSSLNNCGNG QRIFTNNWLY 240 RDTVDSNCAL SLLSSTPTDT KEIGLSHMVQ PNSSTSRRAQ SLIQASLHYC GLGMVSEPEV 300 KPALFTDGSV NGSFHCQEMF RIRPEGSSSG GPHHNSPRGS RIPP

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MEDGSKIEWK DLGTLDMESS SSSMPLKRTR GHSNGIQVPS CLVDGCNSDL SKCRDYHRRH  60
KVCEVHSKTP KVTIGGREQR FCQQCSRFHS LVEFDEEKRS CRKRLDGHNR RRRKPQPEPM  120
SISSGRFLSS YQGPRFSPFH SPQAFPSAAM NSALAMAGAA KSESDVVLDK IHSQFSVTRE  180
NPFPGSLNHS YTGGKEISFL QSPSCTLPEA SSVSQSFMDS SSSLNNCGNG QRIFTNNWLY  240
RDTVDSNCAL SLLSSTPTDT KEIGLSHMVQ PNSSTSRRAQ SLIQASLHYC GLGMVSEPEV  300
KPALFTDGSV NGSFHCQEMF RIRPEGSSSG GPHHNSPRGS RIPP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	98	115	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	4e-46	SBP family protein