PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON54535.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 283aa MW: 32122.6 Da PI: 9.9275

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON54535.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.5	5.5e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+ +++q+G +W++ +r g+ R++k+c++rw +yl PON54535.1 14 KGPWTPEEDRILISYIQQFGHANWRALPRQAGLLRCGKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	55.5	1.3e-17	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++++eE+e ++++++ lG++ W++Ia++++ gRt++++k++w++ PON54535.1 67 RGNFSKEEEETIIKLHQILGNR-WSSIAAKLP-GRTDNEIKNFWHT 110 89******************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence
MVRTPCCEEM GLKKGPWTPE EDRILISYIQ QFGHANWRAL PRQAGLLRCG KSCRLRWTNY 60 LRPDIKRGNF SKEEEETIIK LHQILGNRWS SIAAKLPGRT DNEIKNFWHT RLKKKLQRSN 120 TSMNNSASTP VQKIAQSTST STGIMAVQPQ IVMSNIEEPS SITKEEATVR TVPRSSRNVI 180 NIDNDYGNKY FMLKECLDAK IKCSTTSTTT TTPPLFDPKL QIISLNSKSS TDQYSMKKGS 240 SNDNNGLTSK NEDMDFWYNL FVKAGESTPR PVKDFGCATL RLE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	1e-74	MYB family protein