PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON54337.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 837aa MW: 92095.4 Da PI: 6.4322 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.7 | 2e-18 | 16 | 74 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++ +++ps +r++L +++ +++ +q+kvWFqNrR +ek+ PON54337.1 16 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 74 5679*****************************************************97 PP | |||||||
2 | START | 179.7 | 1.7e-56 | 160 | 368 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W ++++++++l+v+ ++ g+++l + +l PON54337.1 160 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNVLPTAngGTIELLYLQL 257 7899******************************************************.8888888888****************9999********** PP TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS START 99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193 +a+++l+p Rdf+ +Ry+ l++g++v++++S+ ++q+ p+ +++vRae+lpSg+li+p+++g+s +++v+h dl+ ++++++lr+l++s+++ ++ PON54337.1 258 YAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLKNTQNGPTmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHLDLEPWSVPEVLRPLYESSTVLAQ 356 ***************************************9998899***************************************************** PP HHHHHHTXXXXX CS START 194 ktwvatlqrqce 205 kt++a+l+++++ PON54337.1 357 KTTMAALRQLRQ 368 ********9876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 837 aa Download sequence |
MAMSCKDGKP GLDNGKYVRY TPEQVEALER LYHDCPKPSS IRRQQLIREC PILSNIEPKQ 60 IKVWFQNRRC REKQRKEASR LQAVNRKLTA MNKLLMEEND RLQKQVSQLV YENGYFRQHT 120 QSTTLATKDT SCESVVTSGQ HHLTPQHPPR DASPAGLLSI AEETLAEFLS KATGTAVEWV 180 QMPGMKPGPD SIGIVAISHG CTGVAARACG LVGLEPTRVA EILKDRPSWF RDCRAVDVLN 240 VLPTANGGTI ELLYLQLYAP TTLAPARDFW LLRYTSVLED GSLVVCERSL KNTQNGPTMP 300 PVQHFVRAEM LPSGYLIRPC EGGGSIIHIV DHLDLEPWSV PEVLRPLYES STVLAQKTTM 360 AALRQLRQIA HEVSQSNVTG WGRRPAALRV LSQRLSRGFN EALNGFTDEG WSMMGNDGMD 420 DVTILVNSSP DKLMGLNLSF ANEFPAVSNA VLCAKASMLL QNVPPAILLR FLREHRSEWA 480 DNNIDAYSAA AVKVGPCSLA GSRVGSFGGQ VILPLAHTIE HDEFLEVIKL EGIGHSPEDA 540 MMPREMFLLQ LCSGMDENAV GSCAELIFAP IDASFADDAP LLPSGFRIIP LDSGKEASSP 600 NRTLDLASAL EIGPNGTKAS SDYSANNGCV RSVMTIAFEF AFESHLQEHV ASMARQYVRS 660 IISSVQRVAL ALSPSHLSSH AGLRSPLGTP EAQTLARWIC NSYRCYLGVE LLKSSGEGSE 720 SNLKTLWHHS DAVMCCSMKA LPVFTFANQA GLDMLETTLV ALQDISLEKI FDDHGRKTLC 780 SEFPQIMQQG FSCLQGGICL SSMGRPVSYE RAVAWKVLNE EENAHCICFM FVNWSFV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52150.1 | 0.0 | HD-ZIP family protein |