PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PON53823.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 130aa MW: 14293.4 Da PI: 7.2753 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 88.1 | 2.3e-27 | 12 | 127 | 2 | 116 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkvee.enlksnvekeesastsvsse 99 d+ seq+Cyv+C+fC+t+lavsvP ++lf+++tvrCGhCt+ll vn+ a + hl++s+ + +++l e + +++++++++ ++ PON53823.1 12 DHLPPSEQLCYVHCKFCDTVLAVSVPCSTLFQTLTVRCGHCTNLLPVNMCGLLLPSANQFHLGHSFFSPSHHNLLEEIpKPAPNFLVNHQASMADFAQP 110 57789*******************************************999999999999*****9888666655443033333444444555555555 PP YABBY 100 klsenedeevprvppvi 116 +++e++r+p ++ PON53823.1 111 PRGVPHHDELSRPPVIN 127 55666666666655555 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 130 aa Download sequence |
MSSSSASTLS LDHLPPSEQL CYVHCKFCDT VLAVSVPCST LFQTLTVRCG HCTNLLPVNM 60 CGLLLPSANQ FHLGHSFFSP SHHNLLEEIP KPAPNFLVNH QASMADFAQP PRGVPHHDEL 120 SRPPVINRRT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00180.1 | 9e-27 | YABBY family protein |