PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON52923.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

MYB

Protein Properties

Length: 474aa MW: 53812.3 Da PI: 9.9764

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON52923.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.1	1.5e-16	54	100	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+ Ed++l +av+++ g++Wk+Ia+++ gR + qc +rwqk+l PON52923.1 54 KGGWTEGEDKILEHAVRKYNGKNWKKIAECIS-GRNDVQCLHRWQKVL 100 688***************************.**********986 PP
2	Myb_DNA-binding	57.7	2.6e-18	106	152	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+l+v+ v+ +G++ W+ Ia++++ gR +kqc++rw+++l PON52923.1 106 KGSWTKEEDDLIVEKVRVFGTRKWSQIAKYLP-GRIGKQCRERWHNHL 152 799***************************.***********97 PP
3	Myb_DNA-binding	54.3	3.1e-17	158	200	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r +WT+eE++ l++a + +G++ W+ Ia+ ++ gRt++++k++w+ PON52923.1 158 RSPWTEEEELTLIQAQQSYGTK-WAEIAKILP-GRTENSIKNHWN 200 789*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence
MEEEATEHYT NVRNDRLVSY SGPSYSDGSH GNPVPHQASV QGRRTTGPIR RPQKGGWTEG 60 EDKILEHAVR KYNGKNWKKI AECISGRNDV QCLHRWQKVL NPDLIKGSWT KEEDDLIVEK 120 VRVFGTRKWS QIAKYLPGRI GKQCRERWHN HLNPDIIRSP WTEEEELTLI QAQQSYGTKW 180 AEIAKILPGR TENSIKNHWN SSVKRKLTYQ TESDSDPRSR SLEMVRQNPV PDQEVCLARN 240 TETFIPDLNF EAPNETVSEM HYSPEENSLI QRETSRSTFQ DRGEQCKDTS SSIAMVRDSQ 300 HMSAKIGDKL CSNSGATSGV LQASLNSFQG SYQSLKRPHG NMSSINDLGK KISKLGRQTS 360 KTVLSRMTDE AHRRSRDVKA STSTENSNLS LLWYKPLQVE DLNRFLETGK FSSADSYIQT 420 TSTPVSSVTL LSHVKGISSN HSSCPIFVLR SRGRSFKNLP TIIRKRKAST FKAM

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence

MEEEATEHYT NVRNDRLVSY SGPSYSDGSH GNPVPHQASV QGRRTTGPIR RPQKGGWTEG  60
EDKILEHAVR KYNGKNWKKI AECISGRNDV QCLHRWQKVL NPDLIKGSWT KEEDDLIVEK  120
VRVFGTRKWS QIAKYLPGRI GKQCRERWHN HLNPDIIRSP WTEEEELTLI QAQQSYGTKW  180
AEIAKILPGR TENSIKNHWN SSVKRKLTYQ TESDSDPRSR SLEMVRQNPV PDQEVCLARN  240
TETFIPDLNF EAPNETVSEM HYSPEENSLI QRETSRSTFQ DRGEQCKDTS SSIAMVRDSQ  300
HMSAKIGDKL CSNSGATSGV LQASLNSFQG SYQSLKRPHG NMSSINDLGK KISKLGRQTS  360
KTVLSRMTDE AHRRSRDVKA STSTENSNLS LLWYKPLQVE DLNRFLETGK FSSADSYIQT  420
TSTPVSSVTL LSHVKGISSN HSSCPIFVLR SRGRSFKNLP TIIRKRKAST FKAM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.1	3e-78	MYB family protein