PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON52227.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

SBP

Protein Properties

Length: 376aa MW: 40307.6 Da PI: 9.0804

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON52227.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	135.9	1.2e-42	77	152	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC++dls+ak y++rhkvC +hsk+p+v+v++leqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+ PON52227.1 77 RCQVEGCNVDLSDAKAYYSRHKVCGTHSKSPKVVVNNLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP 152 6*************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MEMGSSSMTE SGGSSSSSPP NSSTESLNGL KFGQKIYFED VGLGAPSKSG VGSSSSSGAT 60 PPKKVRGSPV HSGQPPRCQV EGCNVDLSDA KAYYSRHKVC GTHSKSPKVV VNNLEQRFCQ 120 QCSRFHQLPE FDQGKRSCRR RLAGHNERRR KPPPGSLLST RYENSSRVGS FLMDFSAYPR 180 LSGRDTWPTA RISERVPGNQ SAIPTGKFLP YHPWQSNSDN SSSNLYLQTS AGGTSIPAGH 240 GIPPPPGECI SVVADSSCAL SLLSNQQWGS RNRSSSSGLG LHSLMNAQGA PVAEPTTAPH 300 GGTVNHFPTT SWGIKGDMAG SSSHQILPDL GLGQLSQPLS GQFPGELELS QQGRRPYMEP 360 EHSRDFDSSQ HMHWSL

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MEMGSSSMTE SGGSSSSSPP NSSTESLNGL KFGQKIYFED VGLGAPSKSG VGSSSSSGAT  60
PPKKVRGSPV HSGQPPRCQV EGCNVDLSDA KAYYSRHKVC GTHSKSPKVV VNNLEQRFCQ  120
QCSRFHQLPE FDQGKRSCRR RLAGHNERRR KPPPGSLLST RYENSSRVGS FLMDFSAYPR  180
LSGRDTWPTA RISERVPGNQ SAIPTGKFLP YHPWQSNSDN SSSNLYLQTS AGGTSIPAGH  240
GIPPPPGECI SVVADSSCAL SLLSNQQWGS RNRSSSSGLG LHSLMNAQGA PVAEPTTAPH  300
GGTVNHFPTT SWGIKGDMAG SSSHQILPDL GLGQLSQPLS GQFPGELELS QQGRRPYMEP  360
EHSRDFDSSQ HMHWSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	2e-50	SBP family protein