PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON50792.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 188aa MW: 20690.8 Da PI: 10.4623 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67.1 | 1.8e-21 | 10 | 55 | 2 | 47 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 ++++s rqvtfskRr+g++KKA+EL +LC+aev v++fs+ gk + PON50792.1 10 MVKDSSCRQVTFSKRRTGLFKKANELATLCGAEVGVVVFSPGGKPF 55 67999************************************99855 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence |
MGRRKIEMKM VKDSSCRQVT FSKRRTGLFK KANELATLCG AEVGVVVFSP GGKPFSFGQP 60 NIESIADRFL NQEPKTTTTT TTTASSSSSR KKNNKAMEKL NQQLNDRVKQ LHEEKLRGEA 120 LDKGIAEAKG LFLAKKSTEE LGATELTKLK AGLEELRERV KERAGEMEAS SILLMLSNNV 180 VGPPEKSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 6e-43 | M-type_MADS family protein |