PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON50792.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family M-type_MADS
Protein Properties Length: 188aa    MW: 20690.8 Da    PI: 10.4623
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON50792.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.11.8e-211055247
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                 ++++s rqvtfskRr+g++KKA+EL +LC+aev v++fs+ gk +
  PON50792.1 10 MVKDSSCRQVTFSKRRTGLFKKANELATLCGAEVGVVVFSPGGKPF 55
                67999************************************99855 PP

Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    
MGRRKIEMKM VKDSSCRQVT FSKRRTGLFK KANELATLCG AEVGVVVFSP GGKPFSFGQP  60
NIESIADRFL NQEPKTTTTT TTTASSSSSR KKNNKAMEKL NQQLNDRVKQ LHEEKLRGEA  120
LDKGIAEAKG LFLAKKSTEE LGATELTKLK AGLEELRERV KERAGEMEAS SILLMLSNNV  180
VGPPEKSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.16e-43M-type_MADS family protein