PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON50681.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

SBP

Protein Properties

Length: 476aa MW: 52155.2 Da PI: 9.02

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON50681.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	134.4	3.7e-42	184	261	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ dls+ak+yhr+h++Ce+hsk+p+v+v g+e+rfCqqCsrfh l efDe+krsCrrrL++hn+rrrk+q+ PON50681.1 184 RCQVEGCNLDLSSAKDYHRKHRICEIHSKTPKVIVGGVERRFCQQCSRFHGLPEFDEKKRSCRRRLSDHNARRRKPQP 261 6**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence
MEWNSKPPLL WDLEKLFEFD TKATENPKKL QMTDCGNEGD RGISSGSLHS PGDGGGSAGT 60 GGSGSDFGHA SSRSSISASI NSSSIGESKT SKFTLDGFEP FSKDLTSKNE STKVQQPGSS 120 PTAEISAGSG EPLLSLKLGK RMYFKDICSE RNAKTPPSLS VVSMSSATTV KRSKSTSQGT 180 LVPRCQVEGC NLDLSSAKDY HRKHRICEIH SKTPKVIVGG VERRFCQQCS RFHGLPEFDE 240 KKRSCRRRLS DHNARRRKPQ PEAVRLNPAR LSSLYDDIPK MSLVFDQTPR LYTRHAANLT 300 WDNTDSSKFG HTREYLSGPA KPGGTAGQLL LPNSDQMPNN ITMLYQDPSR LMLNKVTAPE 360 VIQSGLEETV VSSDLNTTQD LHRALSLLST SSWGSRETKP ASLDTLNNST HSSVVQPAVH 420 PISQGLPLAS EYWQTQPTID AALPISHRRS NGSSQFQDLH LFKAPTESGF YSYQFN

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence

MEWNSKPPLL WDLEKLFEFD TKATENPKKL QMTDCGNEGD RGISSGSLHS PGDGGGSAGT  60
GGSGSDFGHA SSRSSISASI NSSSIGESKT SKFTLDGFEP FSKDLTSKNE STKVQQPGSS  120
PTAEISAGSG EPLLSLKLGK RMYFKDICSE RNAKTPPSLS VVSMSSATTV KRSKSTSQGT  180
LVPRCQVEGC NLDLSSAKDY HRKHRICEIH SKTPKVIVGG VERRFCQQCS RFHGLPEFDE  240
KKRSCRRRLS DHNARRRKPQ PEAVRLNPAR LSSLYDDIPK MSLVFDQTPR LYTRHAANLT  300
WDNTDSSKFG HTREYLSGPA KPGGTAGQLL LPNSDQMPNN ITMLYQDPSR LMLNKVTAPE  360
VIQSGLEETV VSSDLNTTQD LHRALSLLST SSWGSRETKP ASLDTLNNST HSSVVQPAVH  420
PISQGLPLAS EYWQTQPTID AALPISHRRS NGSSQFQDLH LFKAPTESGF YSYQFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	241	258	KKRSCRRRLSDHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	1e-71	SBP family protein