PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON49316.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
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Family | MYB | ||||||||
Protein Properties | Length: 308aa MW: 34814.6 Da PI: 4.887 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.5 | 2e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++lv ++k++G +W+ ++ g+ R++k+c++rw +yl PON49316.1 14 KGVWSPEEDQKLVAYIKRYGIWNWSEMSKAAGLARSGKSCRLRWMNYL 61 799*****************99************************97 PP | |||||||
2 | Myb_DNA-binding | 50.7 | 4.2e-16 | 68 | 111 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g++++eE e ++ +++ lG++ W++Ia++++ gRt++++k++w++ PON49316.1 68 GNFSKEERETIIALHETLGNR-WSAIAAKLP-GRTDNEVKNYWHTN 111 89*******************.*********.***********986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence |
MGKTWRCQKT HLNKGVWSPE EDQKLVAYIK RYGIWNWSEM SKAAGLARSG KSCRLRWMNY 60 LRPDIKHGNF SKEERETIIA LHETLGNRWS AIAAKLPGRT DNEVKNYWHT NLKKVPKQLR 120 RANSSATCTT SASNSTFSAT ELEAAKPPNS NDDELASPDI DNNLSESITE ISFPHEPSES 180 SKLEGSSNIH LVPLHDELVS TQDFSLLAPV NCETGETQNV NQTILNNASE TFEDIIQTQP 240 VENGGLCTPE DAQAMFIDHP NYGQLIGPSS STTSEAMYSQ QEPIWPYDHF YELEYLCNDW 300 LNHMDTIF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 6e-52 | MYB family protein |