PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON49245.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C3H

Protein Properties

Length: 733aa MW: 79810.5 Da PI: 6.4112

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON49245.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.5	4.1e-07	308	328	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg PON49245.1 308 PCPEFRK-GACRRGDMCEYAHG 328 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 733 aa Download sequence
MCCGSEKLKP ISSPTPSPIS FDESRVTNIA MNHLTVETED TFASLLELAA NNDIEGFKRS 60 IERDPSSIDE TGLWYGRRKG SKLMVNEERT PLMVAATYGS IDVIKLILSL SAADVNRHCG 120 LDRSTALHCA ASGGAENAVD VVKLLMAAGA DPNLVDGNGQ SPVDAVVVPP KLQEVKLALE 180 ELLKTNGSAV ERTLTVSTRT LNSSSPTLSS SSENGSPLAQ DFVSSPSKLK YNDFPVSSLS 240 EKKEYPVDPS LPDIKNSIYS TDEFRMYSFK VRPCSRAYSH DWTECPFVHP GENARRRDPR 300 KFHYSCVPCP EFRKGACRRG DMCEYAHGVF ECWLHPAQYR TRLCKDGTSC ARRVCFFAHT 360 PEELRPLYVS TGSAVPSPRT GTSGAAAMDF AAAMSMLPGS PSSMSVMSPS PFTPPISPSA 420 NGMSHSSMGW PQPNVPALHL PGSNLQSSRL RSSLNARDIP AKDFDLLPDF DVQQQQQLLN 480 ELSCLSQPSL SSNSLNRSGR LKTLTPSNLD DLFSAESSSP RYSDQALQSA VFSPTHKSAV 540 INQFQQQQSM LSPINTNFSP KNVEHPLLHQ TSFGVPSSGR MSPRNLEPIS PMGSLVSMLA 600 QREKQQQFRS LSSRELDSNS ASMVGSPVNS WSKWGSSNGK PDWAVSADEL GKLRRSSSFE 660 LGNNGEEPDL SWVQSLVKES PTEMKEKSTA PVSASTSSSE GSNVNSQMES VDHAVLGAWL 720 EQMQLDHLVA QQN

Sequence ? help Back to Top

Protein Sequence Length: 733 aa Download sequence

MCCGSEKLKP ISSPTPSPIS FDESRVTNIA MNHLTVETED TFASLLELAA NNDIEGFKRS  60
IERDPSSIDE TGLWYGRRKG SKLMVNEERT PLMVAATYGS IDVIKLILSL SAADVNRHCG  120
LDRSTALHCA ASGGAENAVD VVKLLMAAGA DPNLVDGNGQ SPVDAVVVPP KLQEVKLALE  180
ELLKTNGSAV ERTLTVSTRT LNSSSPTLSS SSENGSPLAQ DFVSSPSKLK YNDFPVSSLS  240
EKKEYPVDPS LPDIKNSIYS TDEFRMYSFK VRPCSRAYSH DWTECPFVHP GENARRRDPR  300
KFHYSCVPCP EFRKGACRRG DMCEYAHGVF ECWLHPAQYR TRLCKDGTSC ARRVCFFAHT  360
PEELRPLYVS TGSAVPSPRT GTSGAAAMDF AAAMSMLPGS PSSMSVMSPS PFTPPISPSA  420
NGMSHSSMGW PQPNVPALHL PGSNLQSSRL RSSLNARDIP AKDFDLLPDF DVQQQQQLLN  480
ELSCLSQPSL SSNSLNRSGR LKTLTPSNLD DLFSAESSSP RYSDQALQSA VFSPTHKSAV  540
INQFQQQQSM LSPINTNFSP KNVEHPLLHQ TSFGVPSSGR MSPRNLEPIS PMGSLVSMLA  600
QREKQQQFRS LSSRELDSNS ASMVGSPVNS WSKWGSSNGK PDWAVSADEL GKLRRSSSFE  660
LGNNGEEPDL SWVQSLVKES PTEMKEKSTA PVSASTSSSE GSNVNSQMES VDHAVLGAWL  720
EQMQLDHLVA QQN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	76	83	GRRKGSKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein