PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON48817.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C3H

Protein Properties

Length: 302aa MW: 32091.3 Da PI: 9.5858

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON48817.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.2	1.3e-08	106	131	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck+Gd+C+FaHg+ PON48817.1 106 KTRLCNKYNSAEGCKFGDKCHFAHGE 131 8***********************96 PP
2	zf-CCCH	30.3	7e-10	269	293	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C f + G C +GdrC+FaHg PON48817.1 269 FKTKICEKFTK-GSCAFGDRCHFAHG 293 69*******.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence
MEPGGGGYGG RKRRRFDAAN AGFKKFKPEM DSLSTGIGSK SKPCTKFFST SGCPFGEGCH 60 FSHYVPGGFQ AVSQMINIAG SPALPPVRNP AVPPSFPDGS SPPAVKTRLC NKYNSAEGCK 120 FGDKCHFAHG EWELGRPTAP SYEDQRALGP FLGRLGGRIE PPPHSHALAA SFGASSTAKI 180 SVDASLSGAI IGKHGVNSKQ ICRVTGAKLY VKDHESDPNL KYIELEGTFD QINQASAMVR 240 ELILNVGSAK EKHGKNFFGT GHPGAAGNFK TKICEKFTKG SCAFGDRCHF AHGAEELRKS 300 GI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	11	15	RKRRR
2	12	42	KRRRFDAANAGFKKFKPEMDSLSTGIGSKSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	1e-79	C3H family protein