PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON48595.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

WRKY

Protein Properties

Length: 381aa MW: 42243.1 Da PI: 7.708

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON48595.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	88.1	7.8e-28	205	265	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +D y+WrKYGqKe+ gs++pr+YYrCt++ +Cp+kk+v+r ++dp +++++Y+g+H+++ PON48595.1 205 EDNYTWRKYGQKEIMGSKYPRGYYRCTHQklyNCPAKKQVQRLDDDPFTFQVMYRGNHTCH 265 7**************************999*************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MLKSKTTNLN HKRKLHPDTM EEHNKNVVSL ILHGCTIAKA LESNLESWAN QSNVLANYCD 60 EIAKVFGSAK QRLRGHDHQG MLDDHDQPRE LPQQAHNNID HASFQEWLIR SSVCSFTQAM 120 DINNTSTHPQ ALLLGAETRD LSGHIRTTSA HENRNMGRIE FLGSSASSAP SSSSSQRPRR 180 RKDDHEIRIV NMAAPQIGNT DIPPEDNYTW RKYGQKEIMG SKYPRGYYRC THQKLYNCPA 240 KKQVQRLDDD PFTFQVMYRG NHTCHMSATA PTSSLPLQPA IMSQEMSQNM AAEPLTSSTI 300 TSSVPIGRWL SMEFSPAGAG GSSSHGGGAG TSASTKEIVE YPVLDMADVM FNSGSSSSNS 360 MDFLFPSMED KPRDSGNKKN A

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MLKSKTTNLN HKRKLHPDTM EEHNKNVVSL ILHGCTIAKA LESNLESWAN QSNVLANYCD  60
EIAKVFGSAK QRLRGHDHQG MLDDHDQPRE LPQQAHNNID HASFQEWLIR SSVCSFTQAM  120
DINNTSTHPQ ALLLGAETRD LSGHIRTTSA HENRNMGRIE FLGSSASSAP SSSSSQRPRR  180
RKDDHEIRIV NMAAPQIGNT DIPPEDNYTW RKYGQKEIMG SKYPRGYYRC THQKLYNCPA  240
KKQVQRLDDD PFTFQVMYRG NHTCHMSATA PTSSLPLQPA IMSQEMSQNM AAEPLTSSTI  300
TSSVPIGRWL SMEFSPAGAG GSSSHGGGAG TSASTKEIVE YPVLDMADVM FNSGSSSSNS  360
MDFLFPSMED KPRDSGNKKN A

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	178	182	PRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40740.1	7e-53	WRKY family protein