PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON47821.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 247aa MW: 27905.7 Da PI: 9.9105 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 40.4 | 3.6e-13 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+ r+ tf kR++ + KK +ELS+LC+++++ ii s+ PON47821.1 11 ICNDWARKSTFKKRKKSLVKKLSELSTLCGIDACAIIRSP 50 679999*******************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence |
MTRKKLNLAY ICNDWARKST FKKRKKSLVK KLSELSTLCG IDACAIIRSP YEAEPEALPS 60 AAGVQRVVAK FRKMPEMEQS KNMVNQQGFL SQRISKTSDQ LKRLRNNNRE WELRQVISQS 120 LAGNYMRLES FNAMDLNDLR WLIDSDLKDI HKGIINNKMS SQMAAAPVAV AVDGGHTRGR 180 ESANAVAVAA EVMNLENSGM QRQQWSMDSM NNPQDHGHNH AQHMGFGGDE MNFPFGDNNQ 240 WSNGFFP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 25 | RKKLNLAYICNDWARKSTFKKRK |
2 | 17 | 32 | RKSTFKKRKKSLVKKL |
3 | 22 | 26 | KKRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 7e-39 | M-type_MADS family protein |