PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON47405.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 295aa MW: 33737.5 Da PI: 6.0122 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.7 | 2.4e-19 | 64 | 115 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +q+++Le++Fe ++++ e++++LA++lgL+ rqV +WFqNrRa++k PON47405.1 64 RRLGMDQVKALEKHFEVENKLEPERKAKLADELGLQPRQVAIWFQNRRARWK 115 467789*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 127.5 | 5.6e-41 | 62 | 153 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrrl +qvk+LE++Fe e+kLeperK++la eLglqprqva+WFqnrRAR+ktkq+Ekdy+ Lk++yd+lk + e+L++++e+Lr+++k+ PON47405.1 62 KKRRLGMDQVKALEKHFEVENKLEPERKAKLADELGLQPRQVAIWFQNRRARWKTKQMEKDYSLLKANYDSLKLSYEALQQQNEALRKQVKQ 153 9****************************************************************************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence |
MKRFGSSDSL GALISICAPK DATIVNAEEK YAVTNQEGYS KEFQAMLDSL DQEDCSEEFT 60 GKKRRLGMDQ VKALEKHFEV ENKLEPERKA KLADELGLQP RQVAIWFQNR RARWKTKQME 120 KDYSLLKANY DSLKLSYEAL QQQNEALRKQ VKQLKAKMCR EIEGSNQSIK EESPFSGHES 180 NADHTRENKA EFHETYGNYA KSKDGSSDSD SINGVTKEDH GKPEFSLGPK GSSSSSNSMK 240 NWIQISDNFS RAFSVKICQP QFMRMEDQTP FSSDESCNFF SVDQAPTLHW YFPEQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 62 | 91 | KKRRLGMDQVKALEKHFEVENKLEPERKAK |
2 | 110 | 118 | RRARWKTKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G40060.1 | 2e-55 | HD-ZIP family protein |