PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON47107.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

MYB

Protein Properties

Length: 395aa MW: 44430.6 Da PI: 7.207

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON47107.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.9	2.1e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++++ +G g+W+++++ g+ R++k+c++rw +yl PON47107.1 14 RGLWSPEEDEKLINYISTYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	49.7	8.2e-16	67	109	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++++E l++++++ lG++ W+ Ia++++ gRt++++k++w+ PON47107.1 67 RGSFSPQEAALIIELHTILGNR-WAQIAKHLP-GRTDNEVKNFWN 109 899*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MGHHSCCNKQ KVKRGLWSPE EDEKLINYIS TYGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SPQEAALIIE LHTILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLLSHH 120 DHHHIIPSAL SAAFTDHFHF PITTTTNYSD IHGHEQEASF FTFTATDPNN NMIFTSHHHH 180 HHHEQQLYLP TISPTPPAVP ILLAGPQGSF YQSTDNVHLS SPPNISSSTT LNYDSTLMSF 240 LGYQPTQSSL DQSLSTTVPD IVSSNNSDKQ LIFDQSMILS AYNHENTVLM APTMPKLCDA 300 VDVSNLCSIS TSTTPPFSAT SDPQAEVLNT PPLQDLSRVL VSSFQDSYVP ITSQMEYIDA 360 VIMSSXRHHH AYRHCQRRYL TANSSITSNP NFVYY

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MGHHSCCNKQ KVKRGLWSPE EDEKLINYIS TYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SPQEAALIIE LHTILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLLSHH  120
DHHHIIPSAL SAAFTDHFHF PITTTTNYSD IHGHEQEASF FTFTATDPNN NMIFTSHHHH  180
HHHEQQLYLP TISPTPPAVP ILLAGPQGSF YQSTDNVHLS SPPNISSSTT LNYDSTLMSF  240
LGYQPTQSSL DQSLSTTVPD IVSSNNSDKQ LIFDQSMILS AYNHENTVLM APTMPKLCDA  300
VDVSNLCSIS TSTTPPFSAT SDPQAEVLNT PPLQDLSRVL VSSFQDSYVP ITSQMEYIDA  360
VIMSSXRHHH AYRHCQRRYL TANSSITSNP NFVYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13890.2	8e-77	MYB family protein