PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON46892.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family M-type_MADS
Protein Properties Length: 321aa    MW: 36530.7 Da    PI: 4.4207
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON46892.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.82.5e-27958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krie+++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g++  +s
  PON46892.1  9 KRIESTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRVSFFS 58
                79******************************************998775 PP
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    
MGRVKLQIKR IESTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRVSFFSGN  60
KSIEEILARY VNLPEQEQGR PTSTDSQLEE IQQEILCVGS QLEEMENRLR IFEGDPSEIT  120
TVHEADYREQ ILEETLKKVC MRKQDLEKYT SFESQLTTQV DLPRETANLD HHELVAASPQ  180
NIIDWLSQRD PQIQILNFLD ANGLLPVRDE AQRGVKILAP PSRSVVLVNG QNINDDDEVD  240
DHITPTSGLE NDNNDDNING QLPQLGHLLD VNMSPSWTQF YSTGDEHFDE AGQPGGRELH  300
ELYMSRYAMP HILTPNQNQQ D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77950.21e-44MIKC_MADS family protein