PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON46844.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family GRAS
Protein Properties Length: 537aa    MW: 58771.8 Da    PI: 6.14
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON46844.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS425.25.3e-1301595231374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                 lv+ L++cAe v+ g+l+la +l+++++ l  + +    + ++a yf  AL++r++++  ++         s     e    ++ f+e++P+lkf+h+t
  PON46844.1 159 LVHMLVTCAESVQRGELALAGSLIENMQALltRVNVNCGIGKVAGYFIDALSRRVFSTAGSTG--------SAGAAYEDEVLYHHFYEACPYLKFAHFT 249
                 689**************************9645555579*****************9222222........22234555567899************** PP

        GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 aNqaIlea++ +++vH+iDf++++GlQWpaL+qaLa Rp+gpp lR+Tg+g+p+++ +++l+e+g rLa+fA++++v+f f+ ++a+rled+++++L+v
  PON46844.1 250 ANQAILEAFNDHDCVHVIDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLADFARSVNVRFAFRGVAATRLEDVKPWMLQV 348
                 ************************************************************************************999************ PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +p+Ea+aVn+++qlhrll ++++ +s +  vL  ++sl+Pk+++vveqeadhn++ Fl+rf+eal+yys++fdslea    + + ++ + +++++rei+
  PON46844.1 349 SPKEAVAVNSIMQLHRLLGSDLTRDSGIGMVLGWIRSLNPKIMTVVEQEADHNQAGFLDRFTEALYYYSTMFDSLEAC---AIQPEKALAEMYIQREIC 444
                 ***************************************************************************999...357778888899****** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 nvv+ceg++r+erhe l+kW +rl +aGFkp++l+++a kqa++ll  ++ +gy vee++g+l+lgW++rpL+++SaWr
  PON46844.1 445 NVVCCEGSARFERHEPLAKWTNRLVQAGFKPLHLGSNAFKQASMLLTLFSAEGYCVEEKEGCLTLGWHSRPLIAASAWR 523
                 ******************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    
MGPYDSANSA GSSSGSSSSS SAKPKDNIDG LLAGAGYRVR SSDLRHVAQR LERLETVMVN  60
SPASQITHLA SDSVHYNPSD IASWVDSLLS ELNHPFPLSS DLPDFPDLMI TDPTVGSDVW  120
AADPRPHQNI PPPPLPPLHQ HHHPLTVVTA MEEDSGIRLV HMLVTCAESV QRGELALAGS  180
LIENMQALLT RVNVNCGIGK VAGYFIDALS RRVFSTAGST GSAGAAYEDE VLYHHFYEAC  240
PYLKFAHFTA NQAILEAFND HDCVHVIDFN LMHGLQWPAL IQALALRPGG PPLLRLTGIG  300
PPSPDGRDSL REIGLRLADF ARSVNVRFAF RGVAATRLED VKPWMLQVSP KEAVAVNSIM  360
QLHRLLGSDL TRDSGIGMVL GWIRSLNPKI MTVVEQEADH NQAGFLDRFT EALYYYSTMF  420
DSLEACAIQP EKALAEMYIQ REICNVVCCE GSARFERHEP LAKWTNRLVQ AGFKPLHLGS  480
NAFKQASMLL TLFSAEGYCV EEKEGCLTLG WHSRPLIAAS AWRAVPDPNN PQGIIKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-141GRAS family protein