PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON46806.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C3H

Protein Properties

Length: 966aa MW: 105908 Da PI: 6.7484

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON46806.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.7	7.5e-07	528	548	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr+f+ G C+ Gd+CkF+H+ PON46806.1 528 YCRHFLM-GRCQEGDQCKFSHD 548 6****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 966 aa Download sequence
MGMAVEEAQI ETAKTSETLM HFPPHTRRHL NSQTYRTLVR ILSRCSDESP PSLPAHNVDH 60 DPKSENGSNE LGQITEKRVA QHIELICNDS TEPKVSEKVM EVNLNVGDDA FRDRELGEQM 120 AIDQIDQLMI LDENEDLSNQ KDVSGFQEPG FGSALMLINE LENIVKGNEN IFHENNSKPS 180 MVPFVQDRSI IDQVPFSNHQ KEQADFKQID INFSGNVSEK VLPSLLNTEV LDAGIVREQQ 240 KDSEPDSVSA VDSNNSIPII EFGKTERREG HSQKSSEDLS FSPGRSRVAN TSDASDKSND 300 QISLETNALK VSFKDTQLEK PVCYGNVGDS ANHKIEDVDV EEGEISGGYC TDDISMDMPL 360 QDTGILEGKK VNEDPIADKQ ELSRNIASEI DFGSTFFLLD NNDGVGLRES DKNKTVGTLD 420 IVVNKKALRA SKVDASDDVL EAQKFEANGG HGNDKVVLHG QSLEEDGTRH HNISTEKHDA 480 EVRVKKRSQP SKEKKAKKKQ KKRAEKNRQL GVKRLRLPPI SKPKTVSYCR HFLMGRCQEG 540 DQCKFSHDTV PLTKFKPCCH FARHACMKGD DCPFDHQLSK YPCSNFVSKG FCSRGDSCMF 600 SHKIAPKEDA TTTLNAVEPE KKHASLMCNS FKKQLNDSGA SGYPFNILSC STGISSHKNT 660 EKNTNETVTK QAKMVPKGTS FLSFGSLPLV DSNRLKQQNL SPNSIADAKV GNHIQQHGSG 720 MVQNANEIPA APKGTNPPVV APKGINFLSF GRVQQNDLSS RRLSSSPSSR DSGAKLSPSD 780 NLSMRSQTSS APDSTTSSAP DSNSTLNGTQ PAVAPKGLNF LSFGKSSLDD SCNKGRVEFP 840 FNWDNVTGIS GKERKYPLDG HQYSSSTPSK LPSSSVSLVQ SPNPSSSRIH KDTAQSAQKA 900 LLSTLAFAAK YESGMRLNQS IHDPSVGTEI DKEAKNNGLT GGVQNGLEKV SRIFELLSCI 960 RNKGKQ

Sequence ? help Back to Top

Protein Sequence Length: 966 aa Download sequence

MGMAVEEAQI ETAKTSETLM HFPPHTRRHL NSQTYRTLVR ILSRCSDESP PSLPAHNVDH  60
DPKSENGSNE LGQITEKRVA QHIELICNDS TEPKVSEKVM EVNLNVGDDA FRDRELGEQM  120
AIDQIDQLMI LDENEDLSNQ KDVSGFQEPG FGSALMLINE LENIVKGNEN IFHENNSKPS  180
MVPFVQDRSI IDQVPFSNHQ KEQADFKQID INFSGNVSEK VLPSLLNTEV LDAGIVREQQ  240
KDSEPDSVSA VDSNNSIPII EFGKTERREG HSQKSSEDLS FSPGRSRVAN TSDASDKSND  300
QISLETNALK VSFKDTQLEK PVCYGNVGDS ANHKIEDVDV EEGEISGGYC TDDISMDMPL  360
QDTGILEGKK VNEDPIADKQ ELSRNIASEI DFGSTFFLLD NNDGVGLRES DKNKTVGTLD  420
IVVNKKALRA SKVDASDDVL EAQKFEANGG HGNDKVVLHG QSLEEDGTRH HNISTEKHDA  480
EVRVKKRSQP SKEKKAKKKQ KKRAEKNRQL GVKRLRLPPI SKPKTVSYCR HFLMGRCQEG  540
DQCKFSHDTV PLTKFKPCCH FARHACMKGD DCPFDHQLSK YPCSNFVSKG FCSRGDSCMF  600
SHKIAPKEDA TTTLNAVEPE KKHASLMCNS FKKQLNDSGA SGYPFNILSC STGISSHKNT  660
EKNTNETVTK QAKMVPKGTS FLSFGSLPLV DSNRLKQQNL SPNSIADAKV GNHIQQHGSG  720
MVQNANEIPA APKGTNPPVV APKGINFLSF GRVQQNDLSS RRLSSSPSSR DSGAKLSPSD  780
NLSMRSQTSS APDSTTSSAP DSNSTLNGTQ PAVAPKGLNF LSFGKSSLDD SCNKGRVEFP  840
FNWDNVTGIS GKERKYPLDG HQYSSSTPSK LPSSSVSLVQ SPNPSSSRIH KDTAQSAQKA  900
LLSTLAFAAK YESGMRLNQS IHDPSVGTEI DKEAKNNGLT GGVQNGLEKV SRIFELLSCI  960
RNKGKQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	494	502	KKAKKKQKK