PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON46236.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family GRAS
Protein Properties Length: 684aa    MW: 75492.8 Da    PI: 5.2864
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON46236.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS440.31.4e-1342996691374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 lv+lL++c+ea+ s++ +++++++a+l +lasp+g+p+ R++ay+teAL+ r++r++++++++ pp+e + +  +++ +al+++++v+P+ kf h+t N
  PON46236.1 299 LVSLLTSCVEAIGSKSIHAINHFIAKLGDLASPKGSPISRVTAYYTEALSLRVTRHWPQIFHITPPREFE-RVDEDSGSALRFLNQVTPMTKFLHFTSN 396
                 6899*****************************************************************8.5567778999****************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 +++l+a+eg+ervHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTg+g+    sk+el+etg+rLa fAe+l++pfef++ v++rled++l++L+vk+
  PON46236.1 397 EMLLRAFEGKERVHIIDFDIKQGLQWPSLFQSLASRTNPPSHVRITGIGE----SKQELNETGDRLAGFAEALNLPFEFHP-VVDRLEDVRLWMLHVKE 490
                 **************************************************....***************************.7**************** PP

        GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivn 296
                 +E++aVn+++qlh++l +    +   +++L l++s++P+vvv++eqea+hn++++ +r++++l+yysa+fds+ +++lp +s +rikvE++ ++rei+n
  PON46236.1 491 QESVAVNCIFQLHKTLYDANGGA--FRDFLGLIRSTNPTVVVMAEQEAEHNDPRLEARVCNSLKYYSAIFDSIdASQLPVDSPARIKVEEM-FAREIRN 586
                 ****************6554444..589*********************************************8899**************.******* PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.....sgslvlgWkdrpLvsvSaWr 374
                 +vaceg +r erhe++ekWr+ +e+ GF+++++se++ +q ++ll++++s+ y+v+e+      + l+lgW+d+pL++vSaW+
  PON46236.1 587 IVACEGMDRLERHESFEKWRNLMEQGGFRSAKISERELMQSRMLLKMYSSEDYNVKEQgqdggAAGLTLGWQDQPLFTVSAWT 669
                 *************************************************999****998877778899**************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    
MLAGCSSSTL LSPRHRLRSE APAQFQACHF PMSTQRLDLP CSFSRKDTSR PQQPIRPVGL  60
SVEKPIESKT SSCSLKQSIR LPPLATTAPA AASAAAQTAF VEGRKEIKDE FWPRGKSLKR  120
FAEQGSVDES FISRAKRKRG ISDNDGESND VLEDDERLSL GQLGAGNFWL QPGFNPQLPF  180
SLTCSGGDEE RVCYVPGEVI SPPLPLSNNP WVESVVTEIT DLGEKDGETS RHVPPAKEAS  240
AASSASSGGQ SMALRVNEVV PDYEVGNGSG NPYSRGGSGV VEAGEEDIIS QGENEGFELV  300
SLLTSCVEAI GSKSIHAINH FIAKLGDLAS PKGSPISRVT AYYTEALSLR VTRHWPQIFH  360
ITPPREFERV DEDSGSALRF LNQVTPMTKF LHFTSNEMLL RAFEGKERVH IIDFDIKQGL  420
QWPSLFQSLA SRTNPPSHVR ITGIGESKQE LNETGDRLAG FAEALNLPFE FHPVVDRLED  480
VRLWMLHVKE QESVAVNCIF QLHKTLYDAN GGAFRDFLGL IRSTNPTVVV MAEQEAEHND  540
PRLEARVCNS LKYYSAIFDS IDASQLPVDS PARIKVEEMF AREIRNIVAC EGMDRLERHE  600
SFEKWRNLME QGGFRSAKIS ERELMQSRML LKMYSSEDYN VKEQGQDGGA AGLTLGWQDQ  660
PLFTVSAWTP VDAAGSSSSF SHPS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein