PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON43571.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C3H

Protein Properties

Length: 587aa MW: 67587 Da PI: 9.4143

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON43571.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.3	5.6e-08	543	565	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++lCr++a+ G C +Gd+CkF+H+ PON43571.1 543 QKLCRYYAQ-GRCYHGDKCKFSHD 565 579****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 587 aa Download sequence
MEIDKDEENF CETPEESESE YSSDDSENDP SYNIIDETHA KFSKLSIKKK TKARMVDDHD 60 INLPGEAEND IVPPVLDEKD EKSFEEIQKM IGVDQLEKLK VDQCKVYLRR NGLRLTGNKG 120 TLLQRIKEHL KISNGGGEKK YPVSSFSLNC KGDACTGDVV LFEQKVYDMF NIASRSASGP 180 PCGTRIVAGR IVKESYGAAK QQHTFTIEVL WSKGEKPLPL LHPLLIKGRN LYRLKTLRQK 240 WENEEERQKI LSEKHSRGCL ARSDREARIR VKEKRKMLKE NRISVKEASK NQSQLDWTLV 300 TKPSVQPWNF VASVNSENTE KQALEPQQSG FSADSGKPAS KAQESGLTAN FRKLASQPPA 360 QNRDSYVYCV KVKTQSTLVK NATQDKYIDQ ASPNWAGSRS FTNSERLKSD IHELDPITLS 420 DHRAPASTCS SMNWGEDLAN RATHRQPLTS MNNYPPMIPS RKQNYVDNYR PTSPSRRQNC 480 VDNYRPMSPS SRQNGMNYYR PTSPSRKQNC ADNYRPMSPS RRHNCVDNYR PMSPLRRQNY 540 MQQKLCRYYA QGRCYHGDKC KFSHDMREEC GQRREERWPI DPREFQR

Sequence ? help Back to Top

Protein Sequence Length: 587 aa Download sequence

MEIDKDEENF CETPEESESE YSSDDSENDP SYNIIDETHA KFSKLSIKKK TKARMVDDHD  60
INLPGEAEND IVPPVLDEKD EKSFEEIQKM IGVDQLEKLK VDQCKVYLRR NGLRLTGNKG  120
TLLQRIKEHL KISNGGGEKK YPVSSFSLNC KGDACTGDVV LFEQKVYDMF NIASRSASGP  180
PCGTRIVAGR IVKESYGAAK QQHTFTIEVL WSKGEKPLPL LHPLLIKGRN LYRLKTLRQK  240
WENEEERQKI LSEKHSRGCL ARSDREARIR VKEKRKMLKE NRISVKEASK NQSQLDWTLV  300
TKPSVQPWNF VASVNSENTE KQALEPQQSG FSADSGKPAS KAQESGLTAN FRKLASQPPA  360
QNRDSYVYCV KVKTQSTLVK NATQDKYIDQ ASPNWAGSRS FTNSERLKSD IHELDPITLS  420
DHRAPASTCS SMNWGEDLAN RATHRQPLTS MNNYPPMIPS RKQNYVDNYR PTSPSRRQNC  480
VDNYRPMSPS SRQNGMNYYR PTSPSRKQNC ADNYRPMSPS RRHNCVDNYR PMSPLRRQNY  540
MQQKLCRYYA QGRCYHGDKC KFSHDMREEC GQRREERWPI DPREFQR