PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON43364.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

LBD

Protein Properties

Length: 257aa MW: 27846.7 Da PI: 9.1286

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON43364.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	83.6	2.9e-26	4	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C++lrr+C + C ++p++ p++q++++ +++k++G++ +++l++a p + r+++++sl+ eA+ r+ +Pv G++g++++++++l+++++e+ PON43364.1 4 SCNGCRILRRGCGQRCSIRPCLewiksPQSQSNATLFLAKFYGRAGLINLINAGPFHLRPEIFKSLLHEACGRIVNPVCGSAGLVSSGSWHLCEAAVEA 102 6*************************************************************************************************9 PP DUF260 95 allkee 100 +l++e+ PON43364.1 103 VLRGEP 108 988765 PP

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence
MRLSCNGCRI LRRGCGQRCS IRPCLEWIKS PQSQSNATLF LAKFYGRAGL INLINAGPFH 60 LRPEIFKSLL HEACGRIVNP VCGSAGLVSS GSWHLCEAAV EAVLRGEPIT PVSDELAASR 120 VSGTVSSHGQ LRACDIRHVA KGESSAGCDR LIRKVQSRRR FKRSGTKRKN KVDFESETEF 180 RTQSTQLVLS GPPASHDSEG ARRLSRGADS GEVDSGLIEP KPGDRVGLSG LDLKLSLGFV 240 MWNSDEIDAT CRVDIGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	5e-68	LBD family protein