PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON43094.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

bHLH

Protein Properties

Length: 570aa MW: 61813.5 Da PI: 6.7074

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON43094.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28	3.8e-09	379	426	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq PON43094.1 379 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 426 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 570 aa Download sequence
MENDFFLNAG LAPLLHFEHS NQIPNWQAVS GPLETQAMEL NCSSERSPEY GFYNPTWEKS 60 TADQSAQFDS ALSSMVSSPV ASNSNVSNDS FVIRELIGKL GSIGNSGEIS PHSQPFLTTG 120 SSLPAPAGPY IAGNNSANTS CYSTPLNSPP KMNLEKIPGF GKSMAAVNST VAEFSADPGL 180 AERAARFSYF GSRSFNGRTT QLGLSTNSEL NHNRSSPLTG HWKISRVSSS PSLKALGSQI 240 PIPENRNSPP LQDRTGFTAN SQEESTVSEQ NPIGEMVQRP SNETNSRKRK AASKGKSKEP 300 ALSTKVAEVN DNSNAKRSKQ TESSSNGNDN GSAKTEEETK GNNSNATGDE KQAKTSPKPP 360 EPPKDYIHVR ARRGQATDSH SLAERVRREK ISERMKLLQD LVPGCNKVTG KALMLDEIIN 420 YVQSLQRQVE FLSMKLASVN TRLDANMDTL MSKDIFQPNS SVPHPIFPLD SSAQAIYGHQ 480 HQQNSALHSG ISNGPMTHCS MDPLDTAVCQ NLAMQLPQLN GFTELVSQYP AFGEDDLQSL 540 VQMGFGQNPT RETSLQPNGP NQVSHMKVEL

Sequence ? help Back to Top

Protein Sequence Length: 570 aa Download sequence

MENDFFLNAG LAPLLHFEHS NQIPNWQAVS GPLETQAMEL NCSSERSPEY GFYNPTWEKS  60
TADQSAQFDS ALSSMVSSPV ASNSNVSNDS FVIRELIGKL GSIGNSGEIS PHSQPFLTTG  120
SSLPAPAGPY IAGNNSANTS CYSTPLNSPP KMNLEKIPGF GKSMAAVNST VAEFSADPGL  180
AERAARFSYF GSRSFNGRTT QLGLSTNSEL NHNRSSPLTG HWKISRVSSS PSLKALGSQI  240
PIPENRNSPP LQDRTGFTAN SQEESTVSEQ NPIGEMVQRP SNETNSRKRK AASKGKSKEP  300
ALSTKVAEVN DNSNAKRSKQ TESSSNGNDN GSAKTEEETK GNNSNATGDE KQAKTSPKPP  360
EPPKDYIHVR ARRGQATDSH SLAERVRREK ISERMKLLQD LVPGCNKVTG KALMLDEIIN  420
YVQSLQRQVE FLSMKLASVN TRLDANMDTL MSKDIFQPNS SVPHPIFPLD SSAQAIYGHQ  480
HQQNSALHSG ISNGPMTHCS MDPLDTAVCQ NLAMQLPQLN GFTELVSQYP AFGEDDLQSL  540
VQMGFGQNPT RETSLQPNGP NQVSHMKVEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-109	bHLH family protein