PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON42999.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

bHLH

Protein Properties

Length: 448aa MW: 49099.1 Da PI: 6.6361

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON42999.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.3	8.9e-16	195	241	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR+riN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq PON42999.1 195 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 241 6***********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence
MLWLFKSEAA NPIKLKPNLT QNQTRKEKKK KRKENQSFRE KKKKMGYMCE KNICSPSAPD 60 EISLFLQQIL VRSDSSSSSA AAAAKRDQFS VSSPAMVGPC GGSHASQDNL SRLCRSQMVG 120 DGISAIDSSG ALFLANTSGV AATTNVSSSS VGASENENDE YDCESEEGLE ALVEEVPSKT 180 MIGRGSTKRS RAAEVHNLSE KRRRSRINEK MKALQNLIPN SNKTDKASML DEAIEYLKQL 240 QLQVQMLAMR NGLSLHPVSL AGAQQPAQFS QMRMDFGEEN GSLHPNMTGI IPVNQETSTQ 300 SLFSLPNQRT SSNQRLVPDM LNTINSETTL GLESQVQGHL GAFQLQTSAP EISEENRIQH 360 QQTNLNRSEA SPLEFEMGAM ATVASFNRQA SDIKGNDSLE TCTIEGDWSE GGLLKAIEQS 420 LLLPSHLNSM RTGRSAENEN IKIERANL

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence

MLWLFKSEAA NPIKLKPNLT QNQTRKEKKK KRKENQSFRE KKKKMGYMCE KNICSPSAPD  60
EISLFLQQIL VRSDSSSSSA AAAAKRDQFS VSSPAMVGPC GGSHASQDNL SRLCRSQMVG  120
DGISAIDSSG ALFLANTSGV AATTNVSSSS VGASENENDE YDCESEEGLE ALVEEVPSKT  180
MIGRGSTKRS RAAEVHNLSE KRRRSRINEK MKALQNLIPN SNKTDKASML DEAIEYLKQL  240
QLQVQMLAMR NGLSLHPVSL AGAQQPAQFS QMRMDFGEEN GSLHPNMTGI IPVNQETSTQ  300
SLFSLPNQRT SSNQRLVPDM LNTINSETTL GLESQVQGHL GAFQLQTSAP EISEENRIQH  360
QQTNLNRSEA SPLEFEMGAM ATVASFNRQA SDIKGNDSLE TCTIEGDWSE GGLLKAIEQS  420
LLLPSHLNSM RTGRSAENEN IKIERANL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	25	33	RKEKKKKRK
2	25	34	RKEKKKKRKE
3	28	33	KKKKRK
4	28	44	KKKKRKENQSFREKKKK
5	29	45	KKKKRKENQSFREKKKK
6	30	46	KKKKRKENQSFREKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36930.1	2e-47	bHLH family protein