PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON42590.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 278aa MW: 31134 Da PI: 7.596

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON42590.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.2	2.5e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++l ++k +G g+W+ +++ g++R++k+c++rw++yl PON42590.1 14 RGAWTALEDKILTAYIKAHGEGQWRNLPKRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	51.6	2.2e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ PON42590.1 67 RGNISHDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111 78999***************.*****.**********87 PP

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence
MGRSPCCSKE GLNRGAWTAL EDKILTAYIK AHGEGQWRNL PKRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI SHDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TLGKKIAKSQ 120 PSSASQENKS SLAEQPAKTR GLSDSAAAAD HRSKLIRTRA SRCTRVVIPN PVTLSLPIEN 180 TPATAVPPLR RVDHLHFTNQ PPKNSDGDEE AYYSEVPDQG HYYKGTDHDH EVETVTTGIF 240 GNGDILNDWP VVPGINFLED DDAILDLDSL LLDSDEWP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16720.1	4e-63	MYB family protein