PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON42176.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
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Family | LBD | ||||||||
Protein Properties | Length: 222aa MW: 24127.3 Da PI: 8.8236 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.8 | 2.4e-40 | 24 | 124 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkC+k+C++apyf +eq +++fa+vhk+FGasn +kll ++p+++r da+ sl+yeA+ar+rdPvyG+v++i++lq+q+ +l+aela+++ PON42176.1 24 PCGACKFLRRKCVKGCIFAPYFDSEQgTAHFAAVHKVFGASNASKLLLRIPPHKRLDAVVSLCYEARARIRDPVYGCVAHIFNLQHQVVNLQAELAYVQ 122 7***********************9989*********************************************************************99 PP DUF260 99 ee 100 ++ PON42176.1 123 AR 124 76 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence |
MMNINGGSSF GSSGTGGGGG SSGPCGACKF LRRKCVKGCI FAPYFDSEQG TAHFAAVHKV 60 FGASNASKLL LRIPPHKRLD AVVSLCYEAR ARIRDPVYGC VAHIFNLQHQ VVNLQAELAY 120 VQARLSTLQR LPPALLPPQS QSPSLTTNHI LQSSPDVISA SNSSMHSDPL LHHQQASTEL 180 TSFYANPIDH QPIHDEDLHE LVRQFVSRYF PAGLRLRSST SH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45410.1 | 2e-63 | LBD family protein |