PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PON41964.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 246aa MW: 27354.3 Da PI: 8.5481 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 113.7 | 1.2e-35 | 23 | 121 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 aCaaCk++r+kC ++C+lapyfpae++++f++vhk+FG+snv+k++k++ ++e+r++a++slv+eA ++++dPv G +g ++k+ +l+ k++++++ PON41964.1 23 ACAACKHQRKKCHEGCILAPYFPAERSRDFQAVHKVFGVSNVTKIVKNIvDDEDRRKAVDSLVWEASCWQKDPVLGPYGEYRKVYDELKIYKNQVNQRS 121 7***********************************************967777**************************************9998765 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 246 aa Download sequence |
MQRNTSTTTT KVGGATAGSS QPACAACKHQ RKKCHEGCIL APYFPAERSR DFQAVHKVFG 60 VSNVTKIVKN IVDDEDRRKA VDSLVWEASC WQKDPVLGPY GEYRKVYDEL KIYKNQVNQR 120 SASAYKSLSG LVGWNSPNGN INGHNGMVNG VVNSNSLSYN FHDNGNAMED QSPFCVYTSS 180 YGQNTIPEKI RQEKNNVDHS VVPVVLQQNQ QQYSINGLNQ QYYLSGQFNQ VNTSKTIEST 240 LWDGGS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G06280.1 | 3e-41 | LBD family protein |