PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON41858.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
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Family | LBD | ||||||||
Protein Properties | Length: 256aa MW: 27676.1 Da PI: 8.229 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136 | 1.4e-42 | 47 | 146 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l +lpe++r da++slvyeA+ r+rdPvyG++g+i++lqqq+++l+ael+++++ PON41858.1 47 PCAACKLLRRRCAEECPFSPYFSPQEPQKFAAVHKVFGASNVSKMLMELPESQRADAANSLVYEANLRLRDPVYGCMGLISALQQQIQTLQAELNAVRT 145 7**********************************************************************************************9998 PP DUF260 100 e 100 e PON41858.1 146 E 146 7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence |
MSRDREGLDE IGKRIRADAP NNTNSDQIMG RRVQSFGPPG TLNTITPCAA CKLLRRRCAE 60 ECPFSPYFSP QEPQKFAAVH KVFGASNVSK MLMELPESQR ADAANSLVYE ANLRLRDPVY 120 GCMGLISALQ QQIQTLQAEL NAVRTEILRY KYREATSHHI ISSSTTTTST AHHQAGLANL 180 VSPHVHHGVV SIASLPVPQA ISHSQPPAPP PPPPPPPPSI VVSSSSTTSS TSSLYTPSTN 240 TTGYSSISSD NVPYFD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30340.1 | 6e-78 | LBD family protein |