PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON39514.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 553aa MW: 61989.1 Da PI: 6.8911

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON39514.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.8	1.1e-17	215	261	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd +l+++vkq+G + W+ Ia++m gR +kqc++rw+++l PON39514.1 215 KGQWTDEEDRKLIRLVKQYGVRKWAQIAEKMI-GRAGKQCRERWHNHL 261 799***************************.***********97 PP
2	Myb_DNA-binding	51.4	2.5e-16	267	309	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++W++eE+ +lv+a+++ G++ W+ Ia+++ gRt++ +k++w+ PON39514.1 267 KDSWSEEEERILVEAHAEVGNR-WAEIAKRIA-GRTENAIKNHWN 309 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 553 aa Download sequence
MEEGRGGGGS GFLSGDFTSY IRSAKPYNNT NNIYHHSYSS KPARPPFTAI DRFLSGQSHH 60 LTNTSSQLQA HDHQNNVASA NGLWDFSSNN FTKSHHDNIH HGAINYNSGV HFPWPRLLAT 120 SNHGDDHHHN LDDHHDLHQD QASFFEGLFV DDHDHDDDHM AGEAVMMNRT VLQERININN 180 TCSKGGVVEV VEMINSCKEM GKRALKKAPS AALIKGQWTD EEDRKLIRLV KQYGVRKWAQ 240 IAEKMIGRAG KQCRERWHNH LRPDIKKDSW SEEEERILVE AHAEVGNRWA EIAKRIAGRT 300 ENAIKNHWNA TKRRQNSRRK SSKQAESQKG KPQSSVLQNY IRSKSLMMSN DNNNNNNVPM 360 VVVDLSESNS TNTTTDHSGS ESPLLVSDQI YDDELLFMQK LFSTSSGSST SNNHIPPLVD 420 NCGTTTTTTT ESVKINGGDQ QKLNSTSDRI DHDHHHGNSQ INSKNSTTTS SATHLYSDLY 480 LSYLLNGAPP PPPPSCSSSS SIMVDEHDYG QMCKIKTVEC ADHDHQSYSN EVVGNKREMD 540 LIEMVTSSLF SKV

Sequence ? help Back to Top

Protein Sequence Length: 553 aa Download sequence

MEEGRGGGGS GFLSGDFTSY IRSAKPYNNT NNIYHHSYSS KPARPPFTAI DRFLSGQSHH  60
LTNTSSQLQA HDHQNNVASA NGLWDFSSNN FTKSHHDNIH HGAINYNSGV HFPWPRLLAT  120
SNHGDDHHHN LDDHHDLHQD QASFFEGLFV DDHDHDDDHM AGEAVMMNRT VLQERININN  180
TCSKGGVVEV VEMINSCKEM GKRALKKAPS AALIKGQWTD EEDRKLIRLV KQYGVRKWAQ  240
IAEKMIGRAG KQCRERWHNH LRPDIKKDSW SEEEERILVE AHAEVGNRWA EIAKRIAGRT  300
ENAIKNHWNA TKRRQNSRRK SSKQAESQKG KPQSSVLQNY IRSKSLMMSN DNNNNNNVPM  360
VVVDLSESNS TNTTTDHSGS ESPLLVSDQI YDDELLFMQK LFSTSSGSST SNNHIPPLVD  420
NCGTTTTTTT ESVKINGGDQ QKLNSTSDRI DHDHHHGNSQ INSKNSTTTS SATHLYSDLY  480
LSYLLNGAPP PPPPSCSSSS SIMVDEHDYG QMCKIKTVEC ADHDHQSYSN EVVGNKREMD  540
LIEMVTSSLF SKV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58850.1	3e-55	MYB family protein