PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON38527.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

MYB

Protein Properties

Length: 407aa MW: 46030.7 Da PI: 4.9324

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON38527.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.8	7.9e-16	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++ Ed++l+ ++++G ++W++ ++ g+ R++k+c++rw +yl PON38527.1 16 RGPWSPAEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYL 63 89****************************99**********97 PP
2	Myb_DNA-binding	53.8	4.6e-17	69	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+e ++++++ lG++ W++Ia+ ++ gRt++++k+ w+++l PON38527.1 69 RGNFTKEEEEAIIKLHETLGNK-WSKIASQFP-GRTDNEIKNVWNTHL 114 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
MGRGRAPCCD KSQVKRGPWS PAEDLRLITF IQKHGHENWR ALPKQAGLLR CGKSCRLRWI 60 NYLRPDVKRG NFTKEEEEAI IKLHETLGNK WSKIASQFPG RTDNEIKNVW NTHLKKRLSL 120 QNSDPCGDEH DQSKECSSIT SSSSSSSSTT SVLSSGKRCS GVVQAEHEHQ SDEKSIPKTP 180 RIESREGHVE IGEKMDQDHE PKEVQVVTSA TSSASSYDSN VSNNTSDHQV GVSKLDHEED 240 MDLLFDFKGF YDVSNILQEV NKPEVSDYNP TILESVPLEA DYEFWNMLDS LGTSLQPNHE 300 VQLQESEANC DQGSNFGVQE FSREVETKKW FRYLESELGL EGTTENDNNE NRAMHQETVL 360 LPHLNKYSFH NHIDDLIEAE PESDPCLGFS TAYQMWPSNL AQNSAAI

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

MGRGRAPCCD KSQVKRGPWS PAEDLRLITF IQKHGHENWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDVKRG NFTKEEEEAI IKLHETLGNK WSKIASQFPG RTDNEIKNVW NTHLKKRLSL  120
QNSDPCGDEH DQSKECSSIT SSSSSSSSTT SVLSSGKRCS GVVQAEHEHQ SDEKSIPKTP  180
RIESREGHVE IGEKMDQDHE PKEVQVVTSA TSSASSYDSN VSNNTSDHQV GVSKLDHEED  240
MDLLFDFKGF YDVSNILQEV NKPEVSDYNP TILESVPLEA DYEFWNMLDS LGTSLQPNHE  300
VQLQESEANC DQGSNFGVQE FSREVETKKW FRYLESELGL EGTTENDNNE NRAMHQETVL  360
LPHLNKYSFH NHIDDLIEAE PESDPCLGFS TAYQMWPSNL AQNSAAI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56160.1	1e-73	MYB family protein