PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON37867.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C3H

Protein Properties

Length: 714aa MW: 79105.5 Da PI: 9.0795

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON37867.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24	6.7e-08	172	192	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+f+a+ G+C G++C+F H+ PON37867.1 172 ICDFYAK-GWCIKGSSCRFLHV 192 8****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 714 aa Download sequence
MLLRYMSVLL FKSTRLDVRV DLKSQRHDGS LGSSSSTRGK FGQDVAFSED KRSVEFAIDM 60 KGAETLAEKS SLKHGSKQIS DSNPDLRVND ILNVKSYSSS GAKGKEMVNA ELMNNCIGQK 120 RGLHSQDEIK QMDMQFCNDE KQKVLRLAAF EKETRSHSPG AEIKDNKRLA VICDFYAKGW 180 CIKGSSCRFL HVKDLKNDLA QREGDGAADY KAEVQLGGSR GTAQRSRSPS FHDGLAPSVG 240 NNSAFPLHLP SERIKPLEHV ESKGSLKFPE MPKFLSQREE VFPLSFKDIG RDSKSQNTPA 300 NDYSDHGFLI NRDGPVLRNS FHPENAVSSS GHVISSANYR LMNPSSHSRS MEELASIQSQ 360 RRHNNQTSPL TSHSPNSSSS TSLLTNGLLS SDRNSAWTES TLPFSYSSLN PSPLGSRLSS 420 LFQISSQFSS SEPDNLPSTK RKFSSDDWEP SVPFRPSFLV RSMMSSTGCQ YDPLRDSVEL 480 PKSGDMSLRA SLHSQGSSVV NTLHQQNHGD AVSETPDPVC NDDTKSVSSH NTFHGNMVDE 540 SCRKQGRDTQ TTEVEVVGTS TGWQNGTMPK QKNSLVSSDV KDIKEATSDG RRQSQRHGPK 600 GSLDVKADRI RQNNDVVVGH IVEGVVHKES KALLHFRAAL IDFVKELLKP KWREGLLSKD 660 AHKQIVKKAV EKVLSTLQPE QIPPSMELVK HYLASSRPKI DKLVEDYAEI YGKL

Sequence ? help Back to Top

Protein Sequence Length: 714 aa Download sequence

MLLRYMSVLL FKSTRLDVRV DLKSQRHDGS LGSSSSTRGK FGQDVAFSED KRSVEFAIDM  60
KGAETLAEKS SLKHGSKQIS DSNPDLRVND ILNVKSYSSS GAKGKEMVNA ELMNNCIGQK  120
RGLHSQDEIK QMDMQFCNDE KQKVLRLAAF EKETRSHSPG AEIKDNKRLA VICDFYAKGW  180
CIKGSSCRFL HVKDLKNDLA QREGDGAADY KAEVQLGGSR GTAQRSRSPS FHDGLAPSVG  240
NNSAFPLHLP SERIKPLEHV ESKGSLKFPE MPKFLSQREE VFPLSFKDIG RDSKSQNTPA  300
NDYSDHGFLI NRDGPVLRNS FHPENAVSSS GHVISSANYR LMNPSSHSRS MEELASIQSQ  360
RRHNNQTSPL TSHSPNSSSS TSLLTNGLLS SDRNSAWTES TLPFSYSSLN PSPLGSRLSS  420
LFQISSQFSS SEPDNLPSTK RKFSSDDWEP SVPFRPSFLV RSMMSSTGCQ YDPLRDSVEL  480
PKSGDMSLRA SLHSQGSSVV NTLHQQNHGD AVSETPDPVC NDDTKSVSSH NTFHGNMVDE  540
SCRKQGRDTQ TTEVEVVGTS TGWQNGTMPK QKNSLVSSDV KDIKEATSDG RRQSQRHGPK  600
GSLDVKADRI RQNNDVVVGH IVEGVVHKES KALLHFRAAL IDFVKELLKP KWREGLLSKD  660
AHKQIVKKAV EKVLSTLQPE QIPPSMELVK HYLASSRPKI DKLVEDYAEI YGKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	6e-31	C3H family protein