PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON37782.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

GRF

Protein Properties

Length: 431aa MW: 46926.6 Da PI: 10.0538

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON37782.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.9	1e-24	123	167	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+ep rCrRtDGKkWRCsr+v++++k+CE H+hrgr+rsrk +e+ PON37782.1 123 DPEPSRCRRTDGKKWRCSRNVIPDHKYCEQHIHRGRQRSRKLVED 167 79***************************************9986 PP
2	WRC	64.3	1.8e-20	320	358	3	41
WRC 3 epgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrk 41 epgrCrRtDGKkW Csr+v++++k+C rH+hrg ++ k PON37782.1 320 EPGRCRRTDGKKWQCSRDVVPDQKYCARHMHRGAKKLVK 358 9********************************887665 PP
3	QLQ	47.5	5.4e-17	55	91	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s FT aQlq+L +Q +y++++a++PvPp+L+++i+k PON37782.1 55 SGFTSAQLQELQHQNIIYRHIVARLPVPPHLVVPIWK 91 56*********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence
MEFQTNPSHF GRGGGEEGGD GGVRKRYENG WTVGMHGGKR QEAWPLIKRE QNSNSGFTSA 60 QLQELQHQNI IYRHIVARLP VPPHLVVPIW KSVASTLGAS FYNLYPSFIG FSPQGFDRRN 120 MMDPEPSRCR RTDGKKWRCS RNVIPDHKYC EQHIHRGRQR SRKLVEDAEV SSSPSIAKIH 180 DKSKGGSLQN SNSNISVSVG LQLMTTSSSN NTGVSHGSTT PSSSFTKNQM TCVTAPYITT 240 NTAAISTNTS IPVTTGIKSD HSVSSDVSER YFENNCIIRG SNYDINVGRN LSQGLGFSPR 300 SVLQGCSGLC TNYRNGIKLE PGRCRRTDGK KWQCSRDVVP DQKYCARHMH RGAKKLVKGF 360 PPAASSAASS AAIDPSPLPL TMAVSCKIDH VSPNTNLSIS IPASLPLINK GEKSNSSSSS 420 DTTVSDTGII A

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence

MEFQTNPSHF GRGGGEEGGD GGVRKRYENG WTVGMHGGKR QEAWPLIKRE QNSNSGFTSA  60
QLQELQHQNI IYRHIVARLP VPPHLVVPIW KSVASTLGAS FYNLYPSFIG FSPQGFDRRN  120
MMDPEPSRCR RTDGKKWRCS RNVIPDHKYC EQHIHRGRQR SRKLVEDAEV SSSPSIAKIH  180
DKSKGGSLQN SNSNISVSVG LQLMTTSSSN NTGVSHGSTT PSSSFTKNQM TCVTAPYITT  240
NTAAISTNTS IPVTTGIKSD HSVSSDVSER YFENNCIIRG SNYDINVGRN LSQGLGFSPR  300
SVLQGCSGLC TNYRNGIKLE PGRCRRTDGK KWQCSRDVVP DQKYCARHMH RGAKKLVKGF  360
PPAASSAASS AAIDPSPLPL TMAVSCKIDH VSPNTNLSIS IPASLPLINK GEKSNSSSSS  420
DTTVSDTGII A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45480.1	6e-48	GRF family protein