PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON36960.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C3H

Protein Properties

Length: 695aa MW: 77028.3 Da PI: 7.0495

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON36960.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.1	2.7e-07	103	127	5	26
--SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 5 lCrffartG...tCkyGdrCkFaHg 26 +C+ a+tG C+y d+C+F+H+ PON36960.1 103 ICPEVAKTGdvnSCPYSDKCRFSHD 127 7***********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 695 aa Download sequence
MDESTEVRLV SDPSDSSGPP APLPASNGQQ QTPEELVAKA IAPVKPDFLR PPPVRPASND 60 KEDGAVSESK EKKTAQSAVV KEKKSKRQLK RERRQQQKSS SNICPEVAKT GDVNSCPYSD 120 KCRFSHDLEA FKAQKLDNLE GECPFVSAEE PCPYGLACRF SSTHQEGVFG TRSTRRNSSE 180 ENGLSKDVQK LLWKNKMSFP KADAKLKALG LLGHANSKAK ILEDRKDDQV ASDNCHVANG 240 NCSSALASKK DTEIENSAIE ENAGVDDTTE SGEPRPLKKP KCVVAESCSG KVEDGDVSVV 300 EKVVSESSKQ PEADTTADII TPEADRSLKV HPREKKIIDF RDKLYLAPLT TVGNLPFRRV 360 CKVLGADVTC GEMAMCTNLL QGQASEWALL RRHSSEDLFG VQICGAFPDT LARAIELIDR 420 ECTLDFIDIN MGCPIDIVVN KGAGSALLTK PMRMKGIIEA ASGTVERPLT VKVRTAYFEG 480 KNRIDSLIAD IGNWGASAVT IHGRSRQQRY SKLADWEYIY QCARKAPDDL HVMGNGDIFS 540 YLDWNQHKVD CPKLSTCMIA RGALVKPWIF TEIKEQRHWD ISSGERLNIL KNFVKFGLEH 600 WGSDTKGVET TRRFLLEWLS YTCRYIPVGL LDVVPQRLNW RPPSYFGRDD LETLMASDSA 660 ADWIRISEML LGKVPEGFTF APKHKSNAYD RAENG

Sequence ? help Back to Top

Protein Sequence Length: 695 aa Download sequence

MDESTEVRLV SDPSDSSGPP APLPASNGQQ QTPEELVAKA IAPVKPDFLR PPPVRPASND  60
KEDGAVSESK EKKTAQSAVV KEKKSKRQLK RERRQQQKSS SNICPEVAKT GDVNSCPYSD  120
KCRFSHDLEA FKAQKLDNLE GECPFVSAEE PCPYGLACRF SSTHQEGVFG TRSTRRNSSE  180
ENGLSKDVQK LLWKNKMSFP KADAKLKALG LLGHANSKAK ILEDRKDDQV ASDNCHVANG  240
NCSSALASKK DTEIENSAIE ENAGVDDTTE SGEPRPLKKP KCVVAESCSG KVEDGDVSVV  300
EKVVSESSKQ PEADTTADII TPEADRSLKV HPREKKIIDF RDKLYLAPLT TVGNLPFRRV  360
CKVLGADVTC GEMAMCTNLL QGQASEWALL RRHSSEDLFG VQICGAFPDT LARAIELIDR  420
ECTLDFIDIN MGCPIDIVVN KGAGSALLTK PMRMKGIIEA ASGTVERPLT VKVRTAYFEG  480
KNRIDSLIAD IGNWGASAVT IHGRSRQQRY SKLADWEYIY QCARKAPDDL HVMGNGDIFS  540
YLDWNQHKVD CPKLSTCMIA RGALVKPWIF TEIKEQRHWD ISSGERLNIL KNFVKFGLEH  600
WGSDTKGVET TRRFLLEWLS YTCRYIPVGL LDVVPQRLNW RPPSYFGRDD LETLMASDSA  660
ADWIRISEML LGKVPEGFTF APKHKSNAYD RAENG