PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON35931.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 1178aa MW: 132541 Da PI: 7.669

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON35931.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.5	1.5e-08	455	500	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r++WT++Ed+ l+ v++ G +W Ia+ + ++Rt+ qc r+q PON35931.1 455 RNPWTAQEDKNLLLFVQEKGISNWIDIAASLRTNRTPFQCLVRYQR 500 79***************************************99995 PP
2	Myb_DNA-binding	29.1	2.3e-09	509	552	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+ Ed +l av+ +G +W ++a+ + g t+ qc +rw k PON35931.1 509 REWTKNEDAKLRSAVEAFGESDWQSVASVLE-GWTGTQCSNRWKK 552 68***************************.*********98 PP
3	Myb_DNA-binding	44.6	3.2e-14	562	605	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 grWT++Ed++l+ a ++G+++Wk+ a+ ++ gRt+ qc++rw + PON35931.1 562 GRWTADEDKRLKVAQLLFGPRNWKKTAQFVP-GRTEVQCRERWVN 605 8****************************.*********87 PP
4	Myb_DNA-binding	49.4	1.1e-15	615	658	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd++l+ a++++G W+++a+ ++ +Rt+++c+ rw +l PON35931.1 615 KWTEEEDLKLKAAIAEHGYC-WAKVASALP-RRTDNMCRRRWKRLL 658 8***************99.*****.*********9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 1178 aa Download sequence
MAPRAENGEG EEEEEEEERD MFNSEEEDDV LDEDMEALRR ACMITGTNPD RLLHANASSP 60 SPSPSPAPDA AGESISSAAA AAAEDDDVDD LELVRNIRNR FSTSSELFEP LSLRPLCVLP 120 PAMSDDDGED DDDFETLRAI QKRFAAYNND ALINSTENFL EKEEKVHDAH LSLEKGSYSD 180 LIIDRIDVCK GFSSSENACQ TTSQLGHHEE MQPSASIEWH HRDPSDPSTS QPNYSSFPKS 240 AKVFMDAIKK NRSFQKILRA KLIQIEAKME ENKKLKERVK ILRDFQANCK RRTGRALSQK 300 KDSRVQLISR KKLWPSKDSK VHDKKIPAMY YGPVENSHVA NYRMALTKFP LSLDRKNWSE 360 NERKNLGKGI QQQFQETMLQ IMVDRLSGSG EYHDVSNDLD NILVSIKDFD VTPESIRGFL 420 PKVNWERLAS MYVVGRSGAE CESRWLNFED SLINRNPWTA QEDKNLLLFV QEKGISNWID 480 IAASLRTNRT PFQCLVRYQR SLNVSILKRE WTKNEDAKLR SAVEAFGESD WQSVASVLEG 540 WTGTQCSNRW KKSLHPTREK VGRWTADEDK RLKVAQLLFG PRNWKKTAQF VPGRTEVQCR 600 ERWVNSLDPS LSWDKWTEEE DLKLKAAIAE HGYCWAKVAS ALPRRTDNMC RRRWKRLLPD 660 EVPLLQAAKR IQKAAFIANF VDRESERPAL CPSDFGPLPM ITSSEGINHS KKQTGKPRKA 720 KERNLKKSRE NIKGPKDVLG ITNCGEIETI DGHEAITRQA SQKSNLSKQG PDNKSKKRSH 780 KPPSKRKELT EHNGATECLL SQTERLNLTS DGDRTEPLGE INTTSTKTRR APSKRQCTKM 840 RSACSRQQYS RNSTTNSGEH QLSNLSSEKS LVTGIATDVT LQHDGLSCLD STEIMVINGE 900 EIGMHGGNDK MTSAKSTGPT QYRRRNKGYE PAGGLQEVVP VPSQHNRRKK LKCGGIFCSD 960 QKVVTADDDI PLSCFVNNKS KKRKLKVNDC GRSPACPPLM IQQESEMFPE RVDTSHAEIS 1020 MPSSIQDAEL THCNGRAFDQ SSSCNVKSGL LMGNSSVVAS DNEPGRINQV GGRKVACQEP 1080 ANEMASIDSE SGRDDDDISL ASLVQEKLNM ERQTSKSGTQ ASPPSSLIRG SQLLSKREVS 1140 LDEPRREQVE EDNEVGDVTL ASIVRNRSRK KRRLQSAE

Sequence ? help Back to Top

Protein Sequence Length: 1178 aa Download sequence

MAPRAENGEG EEEEEEEERD MFNSEEEDDV LDEDMEALRR ACMITGTNPD RLLHANASSP  60
SPSPSPAPDA AGESISSAAA AAAEDDDVDD LELVRNIRNR FSTSSELFEP LSLRPLCVLP  120
PAMSDDDGED DDDFETLRAI QKRFAAYNND ALINSTENFL EKEEKVHDAH LSLEKGSYSD  180
LIIDRIDVCK GFSSSENACQ TTSQLGHHEE MQPSASIEWH HRDPSDPSTS QPNYSSFPKS  240
AKVFMDAIKK NRSFQKILRA KLIQIEAKME ENKKLKERVK ILRDFQANCK RRTGRALSQK  300
KDSRVQLISR KKLWPSKDSK VHDKKIPAMY YGPVENSHVA NYRMALTKFP LSLDRKNWSE  360
NERKNLGKGI QQQFQETMLQ IMVDRLSGSG EYHDVSNDLD NILVSIKDFD VTPESIRGFL  420
PKVNWERLAS MYVVGRSGAE CESRWLNFED SLINRNPWTA QEDKNLLLFV QEKGISNWID  480
IAASLRTNRT PFQCLVRYQR SLNVSILKRE WTKNEDAKLR SAVEAFGESD WQSVASVLEG  540
WTGTQCSNRW KKSLHPTREK VGRWTADEDK RLKVAQLLFG PRNWKKTAQF VPGRTEVQCR  600
ERWVNSLDPS LSWDKWTEEE DLKLKAAIAE HGYCWAKVAS ALPRRTDNMC RRRWKRLLPD  660
EVPLLQAAKR IQKAAFIANF VDRESERPAL CPSDFGPLPM ITSSEGINHS KKQTGKPRKA  720
KERNLKKSRE NIKGPKDVLG ITNCGEIETI DGHEAITRQA SQKSNLSKQG PDNKSKKRSH  780
KPPSKRKELT EHNGATECLL SQTERLNLTS DGDRTEPLGE INTTSTKTRR APSKRQCTKM  840
RSACSRQQYS RNSTTNSGEH QLSNLSSEKS LVTGIATDVT LQHDGLSCLD STEIMVINGE  900
EIGMHGGNDK MTSAKSTGPT QYRRRNKGYE PAGGLQEVVP VPSQHNRRKK LKCGGIFCSD  960
QKVVTADDDI PLSCFVNNKS KKRKLKVNDC GRSPACPPLM IQQESEMFPE RVDTSHAEIS  1020
MPSSIQDAEL THCNGRAFDQ SSSCNVKSGL LMGNSSVVAS DNEPGRINQV GGRKVACQEP  1080
ANEMASIDSE SGRDDDDISL ASLVQEKLNM ERQTSKSGTQ ASPPSSLIRG SQLLSKREVS  1140
LDEPRREQVE EDNEVGDVTL ASIVRNRSRK KRRLQSAE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	776	780	KKRSH
2	947	984	RRKKLKCGGIFCSDQKVVTADDDIPLSCFVNNKSKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.1	0.0	MYB family protein