PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PON34406.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 254aa MW: 27346.5 Da PI: 7.1409 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.3 | 1.2e-38 | 49 | 150 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar+ dPvyG+v++il+lqqq+++l++ela+++ PON34406.1 49 PCGACKFLRRKCISGCIFAPHFGSAQgAARFAAVHKVFGASNVSKLLLHIPVNRRHDAVVTISYEAQARLADPVYGCVSTILALQQQVASLQSELAMVQ 147 7*********************998879**********************************************************************9 PP DUF260 99 eel 101 ++l PON34406.1 148 NQL 150 986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 254 aa Download sequence |
MSGVAHGEDH STGASDNRRN KATTKRTTAA PPDQLEPTTA TAAPVPPAPC GACKFLRRKC 60 ISGCIFAPHF GSAQGAARFA AVHKVFGASN VSKLLLHIPV NRRHDAVVTI SYEAQARLAD 120 PVYGCVSTIL ALQQQVASLQ SELAMVQNQL MSSRFAFANA LQSSQQQQHP QQLQQHTVGV 180 LQPAYSNNSS ASNNLINMTS FTSNFDLAAA TADTTPSSHS LEPLQLSRPS HDEEDDEEES 240 RIPHVYPNEI IHRG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G03760.1 | 2e-58 | LBD family protein |