PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON34367.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

bHLH

Protein Properties

Length: 556aa MW: 60079.6 Da PI: 5.6373

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON34367.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.6	1.6e-11	351	393	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A++Y+k+L PON34367.1 351 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 393 79*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence
MLPRSSGAVW MDGDEEDAAS WTKNNEGEQP NKEEEMAMGG GASFSSFKSM LEGDWYINNA 60 LNPPHQDLHP LPSHHDIRDL DFCSNPATDH NLLLHPIDSS ASCSPSQAFA LDPAHSHHFL 120 PPKSCFSSLL NVVSANPFDN GFDLSCESGF LGSFQGNQAS NSPVLMGFTG LNSQSQMGTP 180 ELSSSSEFPG TRLLPLSDDG AALGGGGFSP TGFEGFDGSG SALFLNRAKV LRPLEVFPPV 240 GAQPTLFQKR AALRQNSGGA DKLGNLEISG SRFGKGLESL EKKRKMIDEG EIEEASIDVS 300 GLNYDSDEAN EYSKLEENGK NGGSNSNANS TVTGGGDQKG KKKGLPAKNL MAERRRRKKL 360 NDRLYMLRSV VPKISKMDRA SILGDAIDYL KELLQRINDL HNELESTPPG SLLPPSTSFH 420 PLTPTPPTLP CRVKEELFPG SLPSPKNQPA RVEVRLREGR AVNIHMFCAR RPGLLLSTMR 480 ALDNLGLDIQ QAVISCFNGF ALDVFRAEVC FSASKQLPGS NLSLLFQALQ CREGQEVLPE 540 QIKAVLLDSA GFHGTI

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence

MLPRSSGAVW MDGDEEDAAS WTKNNEGEQP NKEEEMAMGG GASFSSFKSM LEGDWYINNA  60
LNPPHQDLHP LPSHHDIRDL DFCSNPATDH NLLLHPIDSS ASCSPSQAFA LDPAHSHHFL  120
PPKSCFSSLL NVVSANPFDN GFDLSCESGF LGSFQGNQAS NSPVLMGFTG LNSQSQMGTP  180
ELSSSSEFPG TRLLPLSDDG AALGGGGFSP TGFEGFDGSG SALFLNRAKV LRPLEVFPPV  240
GAQPTLFQKR AALRQNSGGA DKLGNLEISG SRFGKGLESL EKKRKMIDEG EIEEASIDVS  300
GLNYDSDEAN EYSKLEENGK NGGSNSNANS TVTGGGDQKG KKKGLPAKNL MAERRRRKKL  360
NDRLYMLRSV VPKISKMDRA SILGDAIDYL KELLQRINDL HNELESTPPG SLLPPSTSFH  420
PLTPTPPTLP CRVKEELFPG SLPSPKNQPA RVEVRLREGR AVNIHMFCAR RPGLLLSTMR  480
ALDNLGLDIQ QAVISCFNGF ALDVFRAEVC FSASKQLPGS NLSLLFQALQ CREGQEVLPE  540
QIKAVLLDSA GFHGTI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	341	359	KKKGLPAKNLMAERRRRKK
2	353	360	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	1e-147	bHLH family protein