PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA67014.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

SRS

Protein Properties

Length: 333aa MW: 34597.4 Da PI: 7.8371

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA67014.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	217.1	3.8e-67	109	270	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...aeaaskrkrelkskkqsalsstklssaeskke 99 t++CqdCGnqakkdC+h+RCRtCCksrgfdC+thvkstWvpaa+rrerq + +a++ +a a+ +++++k++r +++q++++s + +s++++++ PKA67014.1 109 ATTTCQDCGNQAKKDCNHRRCRTCCKSRGFDCSTHVKSTWVPAARRRERQLAVSATAGTAGAAGssaSTSTPKKPRL--ISSQTTTTSHTSTSTTPPRS 205 5789*******************************************8777666555444432223444444443..44455555555556678889 PP DUF702 100 letss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++tss lP +v+++a+f+cvrv+s+ddge+e+aYq+ v+igGhvfkG+LydqG e+ PKA67014.1 206 FDTSSshqgnpagehLPGHVRAPAIFKCVRVTSIDDGEDEYAYQAMVTIGGHVFKGFLYDQGEED 270 9998889*****************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence
MGMVGLRDVF FVAPAASFQP PPQSHEQLLP VAEHPIIPLL TAAPTLVDDS HHDSRAGKPA 60 GGIQFWQAAQ ALPSPHPPPS QNPNPNPNFS SSSYPRKPNP PLILSGAGAT TTCQDCGNQA 120 KKDCNHRRCR TCCKSRGFDC STHVKSTWVP AARRRERQLA VSATAGTAGA AGSSASTSTP 180 KKPRLISSQT TTTSHTSTST TPPRSFDTSS SHQGNPAGEH LPGHVRAPAI FKCVRVTSID 240 DGEDEYAYQA MVTIGGHVFK GFLYDQGEED SGANTHNIFT GAAFPNVSEL HLGVAGAGAS 300 SSSAVLPSDV YDGAAAASGA VLLGGPAYGN PIN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.1	1e-53	SRS family protein