PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA66913.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C3H

Protein Properties

Length: 581aa MW: 62434.2 Da PI: 7.8155

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA66913.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.2	1.2e-07	229	249	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C+ Gd C +aHg PKA66913.1 229 PCPDFRK-GSCSKGDECEYAHG 249 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 581 aa Download sequence
MEAAAVALLL ELSASDDLTA FMKAVEENNL PLDASAPWYS RTIGPASSLN RAMRYDHRTP 60 AMIAALYGST AVLGYILGQK AVDVNRHCGT DGATALHCAA AGGSPASVEA VRLLIEASAD 120 ADAVDSKGNR PGDVIAKQFS ASTARDLEVL LKSPCPRVSS PSKKEYPLDS TLPDIKSGIY 180 GTDEFRMFTF KVKPCSRAYS HDWTECPFVH PGENARRRDP RKFTYSCVPC PDFRKGSCSK 240 GDECEYAHGV FESWLHPAQY RTRLCKDEVG CNRRVCFFAH KPEELRSVNP TAASVAGVVS 300 SSPRSSSVGL SSFDIAAALM LLQSAPGSPM SPSASSAMSS PAAWMNPAGS ATSSRLKSSL 360 SARNLDFNLE SSYQHKPFDE MPNIASPRSN WKTNSLNLSG SLDELVRSQL QSQQLQSFSG 420 GNLPSSPVVN SSSTFGLDNS MAKAILNSRQ AAFAKRSQSF IDRRGAIASP VISPEANIPP 480 LGLSDWGSPD GKLDWGIQGD ELNKLKKSAT FNYRSNPSGK LGSSNSQAMM SVLKDSPTAA 540 MCGPGLPPIS RPMADNHQKQ YLDFLSWEQL YADQEQLVAS S

Sequence ? help Back to Top

Protein Sequence Length: 581 aa Download sequence

MEAAAVALLL ELSASDDLTA FMKAVEENNL PLDASAPWYS RTIGPASSLN RAMRYDHRTP  60
AMIAALYGST AVLGYILGQK AVDVNRHCGT DGATALHCAA AGGSPASVEA VRLLIEASAD  120
ADAVDSKGNR PGDVIAKQFS ASTARDLEVL LKSPCPRVSS PSKKEYPLDS TLPDIKSGIY  180
GTDEFRMFTF KVKPCSRAYS HDWTECPFVH PGENARRRDP RKFTYSCVPC PDFRKGSCSK  240
GDECEYAHGV FESWLHPAQY RTRLCKDEVG CNRRVCFFAH KPEELRSVNP TAASVAGVVS  300
SSPRSSSVGL SSFDIAAALM LLQSAPGSPM SPSASSAMSS PAAWMNPAGS ATSSRLKSSL  360
SARNLDFNLE SSYQHKPFDE MPNIASPRSN WKTNSLNLSG SLDELVRSQL QSQQLQSFSG  420
GNLPSSPVVN SSSTFGLDNS MAKAILNSRQ AAFAKRSQSF IDRRGAIASP VISPEANIPP  480
LGLSDWGSPD GKLDWGIQGD ELNKLKKSAT FNYRSNPSGK LGSSNSQAMM SVLKDSPTAA  540
MCGPGLPPIS RPMADNHQKQ YLDFLSWEQL YADQEQLVAS S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	1e-117	C3H family protein