PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA66724.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | LBD | ||||||||
Protein Properties | Length: 214aa MW: 23854.9 Da PI: 6.5079 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 108 | 7.4e-34 | 34 | 131 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +Ca+C+ lrrkC+++Cvlap+f +++p++fa+v++++G+snv k+l++l++++re+a++slvyeA++ +rdPv+G++g + + +++l++l+ el++ + PKA66724.1 34 PCAGCQKLRRKCKPECVLAPHFTSRSPETFACVQEVYGVSNVEKMLRRLHPSQREEAVDSLVYEARMILRDPVHGCLGQVAARHRELRRLADELSRSR 131 7********************************************************************************************99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence |
METSTSNSHA DQQSSPRLPP EARVIRRRTV HGSPCAGCQK LRRKCKPECV LAPHFTSRSP 60 ETFACVQEVY GVSNVEKMLR RLHPSQREEA VDSLVYEARM ILRDPVHGCL GQVAARHREL 120 RRLADELSRS RAILSVYQTL AASLEAGDPV PGISVDMESD HDDRRQQQPA ALPQQTETMS 180 KAPAEEVGGI NGEYDAPVGE EELQQHVDLL RMLL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65620.3 | 6e-37 | LBD family protein |