PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA66589.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

RAV

Protein Properties

Length: 345aa MW: 37643.6 Da PI: 10.0664

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA66589.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	36	1.7e-11	58	106	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ + r++lg+f + eAa+a++ a+++++g PKA66589.1 58 SQFKGVVPQP-NGRWGAQIYEK-----HHRVWLGTFTLEREAARAYDVAAQRFRG 106 68998778.8*****3.....5******99***********98 PP
2	B3	92.1	4.2e-29	178	269	1	89
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f k+ tpsdv+k++rlv+pk++ae+h g e+++ l++ed g++W++++ y+ +s++yvltkGW++Fvk++gLk+gD v F +++ + PKA66589.1 178 FHKAVTPSDVGKLNRLVIPKQYAEKHlplsagG-G-EKGMLLSFEDGGGKVWRFRYAYWHSSQSYVLTKGWSRFVKEKGLKAGDKVGFCRSK-GT 269 899*************************843.3.4899********************************************998544.33 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MDTSSRIDYS SATSDAAEPP PPPLQRAGSA ASAVTDPPPA AAFEPGSDAE SRGKLQSSQF 60 KGVVPQPNGR WGAQIYEKHH RVWLGTFTLE REAARAYDVA AQRFRGRDAV TNFPPLSARA 120 DAAHELAFVL SRSKAEIVDL LRKHTYLDEL HRSRRPSKGT SSSDLSGEVK TPAREFLFHK 180 AVTPSDVGKL NRLVIPKQYA EKHLPLSAGG GEKGMLLSFE DGGGKVWRFR YAYWHSSQSY 240 VLTKGWSRFV KEKGLKAGDK VGFCRSKGTA EPQLYIDCKL RAGGESGGGD RSHLQVLRLF 300 GVDIVKAPVA GCVVNENGKR RPVNAEAAAA CDGWLNWKKQ CIVVL

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MDTSSRIDYS SATSDAAEPP PPPLQRAGSA ASAVTDPPPA AAFEPGSDAE SRGKLQSSQF  60
KGVVPQPNGR WGAQIYEKHH RVWLGTFTLE REAARAYDVA AQRFRGRDAV TNFPPLSARA  120
DAAHELAFVL SRSKAEIVDL LRKHTYLDEL HRSRRPSKGT SSSDLSGEVK TPAREFLFHK  180
AVTPSDVGKL NRLVIPKQYA EKHLPLSAGG GEKGMLLSFE DGGGKVWRFR YAYWHSSQSY  240
VLTKGWSRFV KEKGLKAGDK VGFCRSKGTA EPQLYIDCKL RAGGESGGGD RSHLQVLRLF  300
GVDIVKAPVA GCVVNENGKR RPVNAEAAAA CDGWLNWKKQ CIVVL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13260.1	1e-107	RAV family protein