PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA66522.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family C3H
Protein Properties Length: 397aa    MW: 45176.9 Da    PI: 7.2004
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA66522.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.68.1e-07731127
                --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                ykt+lC  ++r G C++  +C+FaHg+
  PKA66522.1  7 YKTKLCVLYQR-GRCPR-QNCSFAHGE 31
                9**********.*****.*******96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    
MLGRRMYKTK LCVLYQRGRC PRQNCSFAHG EAELRRFGGP FSGRRDYRSG DLRDKLDRRH  60
SPLRRYSPGR DGRGYHSFHS QRPVSHDGSK HSLIFPFRAF QFYRLDALIE HSRKEKSMTF  120
SDKNGILEEQ NSVETSTGLP EIVGKNQKSS KNHQSQARLQ RLGDQVGSDI SKLRAHEEDS  180
SINVTSDADP NGYIQEAKQN DLMLHASSST KKRPVAYPTA SEDMKTGNAS KKNRRSVMST  240
KADWFTLSDA QGLSSEHAAK ESETTKFNYE RKDSPSSVVD VQKHKRGKVS RTRISAEKFR  300
SSEVERTLPT ISLSDHIIDE LIEDIEIDEK SQDMEAAARN EDEDTGKRES SYIPPLPPPI  360
NKNAYKQYEG DDEDVDVERV DSEMLDIDLN GEVDVEQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.15e-16C3H family protein