PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA66511.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family bHLH
Protein Properties Length: 350aa    MW: 37863.8 Da    PI: 6.2704
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA66511.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.5e-11169215455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h  +Er+RR+++ ++f  L  ++P +     kK++Ka++L +A++Y+k Lq
  PKA66511.1 169 DHILAERKRREKLSQRFIALSAVVPGL-----KKMDKASVLGEAIKYLKALQ 215
                 6999***********************.....9******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    
MDSQGATARW LSETGVMLDP NYDHQWELGS LDQFMASNLW EDLNQNLSSE SYSLDPPASM  60
TTNSPSCGSS IDSSHNGTAA VAGGADRPKK KPKSNDCDPF AAPTAPAILP PTASPSILSF  120
GKPDSHNDST ELYKDLVAGA KRSFDAMAAA QRPKKAGTAL TRPSSHNQDH ILAERKRREK  180
LSQRFIALSA VVPGLKKMDK ASVLGEAIKY LKALQEKLKA LEDQAAKRTV ESAVLVKRTY  240
LSVSGDDEIN DASSSDENFD GEDSGTLPEI EVKLSGKTVL IKIHCEGRKG TLVRVLSEIE  300
KLQLAIMNTS VAPFAASSLD ITVVAQIEEG FSMTVKDLVR KLNLNIRQFM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18894PKKKPKS
2174179ERKRRE
3175180RKRREK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.17e-50bHLH family protein