PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA66504.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

GRF

Protein Properties

Length: 583aa MW: 62888.8 Da PI: 7.8252

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA66504.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.2	1.7e-24	224	267	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e PKA66504.1 224 DPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKHVE 267 79****************************************98 PP
2	QLQ	52.1	2e-18	154	188	1	35
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 ++FT++Q+++L++Q+++yKy+ a+ PvP+ Ll++i PKA66504.1 154 GPFTPSQWMELEHQAMIYKYIDAKTPVPSSLLFPI 188 59*******************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 583 aa Download sequence
MDFRGALNMD GSLHFSSESH SPFSSPFPTS ASESKQRGVS EFDFSKHGRF MGLEGNEWSP 60 SRLKTASSSD SVLTPTSKAA ACVLRSNSYS LFPDGEQMLS FSSSVPDPVL LSNDGTLPFY 120 HCRSPSAPSN LKNPGLWSTS SNMGTHGILA GIRGPFTPSQ WMELEHQAMI YKYIDAKTPV 180 PSSLLFPIGR NLKQAGFPPF TAGSYGTGTS GWGSFHMGLA GNADPEPGRC RRTDGKKWRC 240 SRDAVVDQKY CERHMNRGRH RSRKHVEGLS GHTANAAMPT SITPSKSVSP GSIDSSYNSL 300 TIAHRPQSKS WHPGKAEASS LQPDRLLMNK ENGHEPIGNA EGLSILTGFS TRPVDMLFPS 360 SKQKDSFDGT STLSNFGKLI STDSLLSPPS SSYAEILSFA VAPEKNVQPS KTHHPLLHFI 420 DDYSRNQSAS HSAVSWPDVD EMHTDRTTQL SISIPITSSE FSSSSSSPNH DRLASSPARH 480 SSWIPISWEP TLGGPLGEVL TNTSSKPNKP LSMNHSSSSL NLLTDGWDSN SRLESSPTGV 540 LQKASFISLS SSTGSSPQAE NHITHESTDL GSTMAKPSTI TLL

Sequence ? help Back to Top

Protein Sequence Length: 583 aa Download sequence

MDFRGALNMD GSLHFSSESH SPFSSPFPTS ASESKQRGVS EFDFSKHGRF MGLEGNEWSP  60
SRLKTASSSD SVLTPTSKAA ACVLRSNSYS LFPDGEQMLS FSSSVPDPVL LSNDGTLPFY  120
HCRSPSAPSN LKNPGLWSTS SNMGTHGILA GIRGPFTPSQ WMELEHQAMI YKYIDAKTPV  180
PSSLLFPIGR NLKQAGFPPF TAGSYGTGTS GWGSFHMGLA GNADPEPGRC RRTDGKKWRC  240
SRDAVVDQKY CERHMNRGRH RSRKHVEGLS GHTANAAMPT SITPSKSVSP GSIDSSYNSL  300
TIAHRPQSKS WHPGKAEASS LQPDRLLMNK ENGHEPIGNA EGLSILTGFS TRPVDMLFPS  360
SKQKDSFDGT STLSNFGKLI STDSLLSPPS SSYAEILSFA VAPEKNVQPS KTHHPLLHFI  420
DDYSRNQSAS HSAVSWPDVD EMHTDRTTQL SISIPITSSE FSSSSSSPNH DRLASSPARH  480
SSWIPISWEP TLGGPLGEVL TNTSSKPNKP LSMNHSSSSL NLLTDGWDSN SRLESSPTGV  540
LQKASFISLS SSTGSSPQAE NHITHESTDL GSTMAKPSTI TLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	2e-46	GRF family protein