PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA66276.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB_related

Protein Properties

Length: 672aa MW: 73889.8 Da PI: 7.2956

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA66276.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.9	9.6e-13	28	84	1	47
TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...........tWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G + Ia+++g ++t+ q++s+ qk+ PKA66276.1 28 RERWTEEEHRRFLEALKLHGRAwqrievallwgSYLYIAEHIG-TKTAIQIRSHAQKF 84 78****************77*****************.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 672 aa Download sequence
MSLRMEVNSS GEEHVVKTRK PYIITKQRER WTEEEHRRFL EALKLHGRAW QRIEVALLWG 60 SYLYIAEHIG TKTAIQIRSH AQKFFTKLEK EAAAKGMPLG QAHDIEIPPP RPKRKPNSPY 120 PRKSSGTCFP SATDSGNDKT SKFSYSHEAY KQDFGLESNA IVEVSATKNS VQGTNECSDE 180 GSSAIVLNLF QETPLSSSSP GNKGSANPYS FREFVPIVNE QNETLSTKGS SLSIEVNTET 240 SINSLSNSVH DPGNRNETRI NLHSLPMNST LDQTNGCGKQ AGKPSKGDIQ EDAKNHDHPE 300 VNFENGGFPS NASQFVNQPI SLVPGFNSSS ATSSISQPFP TFQPISQFRS AQDFYRYVLN 360 ISSNFSSLIV TTLMQNPAIH AAARMAASIW PSAETSSDSS NMAAIAAATV AAASAWWATH 420 GLLPFFPPIH TGFTFPPSAT AVPIMNTSLA QEDYMEEKHM THQNSSLTDL HADCQANPNA 480 LKSAISSSSE IEKDHSNINT GAYHNSDKAK ISKKIERSSC GSNTPSSSEV ETDAAHKKNC 540 ETKDESKHPH LENLPSVEVN ARRPRFNGSM NESWKEVSQE GRLAFQALFT RDVLPQSFSP 600 PHAKNAKELP KEGTSTAKDD SIGSYSFANE AGERNSKIRH IGFKPYKRCS VEAEDNRSSA 660 HDQISNKRAR VE

Sequence ? help Back to Top

Protein Sequence Length: 672 aa Download sequence

MSLRMEVNSS GEEHVVKTRK PYIITKQRER WTEEEHRRFL EALKLHGRAW QRIEVALLWG  60
SYLYIAEHIG TKTAIQIRSH AQKFFTKLEK EAAAKGMPLG QAHDIEIPPP RPKRKPNSPY  120
PRKSSGTCFP SATDSGNDKT SKFSYSHEAY KQDFGLESNA IVEVSATKNS VQGTNECSDE  180
GSSAIVLNLF QETPLSSSSP GNKGSANPYS FREFVPIVNE QNETLSTKGS SLSIEVNTET  240
SINSLSNSVH DPGNRNETRI NLHSLPMNST LDQTNGCGKQ AGKPSKGDIQ EDAKNHDHPE  300
VNFENGGFPS NASQFVNQPI SLVPGFNSSS ATSSISQPFP TFQPISQFRS AQDFYRYVLN  360
ISSNFSSLIV TTLMQNPAIH AAARMAASIW PSAETSSDSS NMAAIAAATV AAASAWWATH  420
GLLPFFPPIH TGFTFPPSAT AVPIMNTSLA QEDYMEEKHM THQNSSLTDL HADCQANPNA  480
LKSAISSSSE IEKDHSNINT GAYHNSDKAK ISKKIERSSC GSNTPSSSEV ETDAAHKKNC  540
ETKDESKHPH LENLPSVEVN ARRPRFNGSM NESWKEVSQE GRLAFQALFT RDVLPQSFSP  600
PHAKNAKELP KEGTSTAKDD SIGSYSFANE AGERNSKIRH IGFKPYKRCS VEAEDNRSSA  660
HDQISNKRAR VE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01060.4	2e-40	MYB_related family protein