PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA66190.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

ARF

Protein Properties

Length: 807aa MW: 89963.4 Da PI: 6.7173

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA66190.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	72.9	3.8e-23	129	230	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d + +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++++ +l PKA66190.1 129 FCKTLTASDTSTHGGFSVPRRSAEKVfppldfsQQPPA--QELIARDIHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQL 223 99***************************8544444..48********************************************..8899999 PP EEEEE-S CS B3 93 vvkvfrk 99 +++++r+ PKA66190.1 224 LLGIRRA 230 **997 PP
2	Auxin_resp	112.8	3.3e-37	255	338	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++Y+Pra++seFv++++k+++a+ +++svGmRf+m fete+ss rr++Gt++g+ dldpvrW nS+Wrs+k PKA66190.1 255 AAHAAATNSRFTIFYHPRACPSEFVIPLSKYVRAVFhTRISVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWANSHWRSVK 338 79****************************9986599****************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 807 aa Download sequence
MKLSTVGGVV QQDAEGGKKR CLNSELWHAC AGPLVCLPNV GTRVVYFPQG HSEQVAASTN 60 KEVEGHIPNY PNLPPQLICQ LHDVTMHADA ETDEVYAQMT LQPLNPQELK DAYLPSEMGL 120 PSKQPMNHFC KTLTASDTST HGGFSVPRRS AEKVFPPLDF SQQPPAQELI ARDIHDVEWK 180 FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA NRPQNAVPSS 240 VISSDSMHIG LLAAAAHAAA TNSRFTIFYH PRACPSEFVI PLSKYVRAVF HTRISVGMRF 300 RMLFETEESS VRRYMGTITG IGDLDPVRWA NSHWRSVKVN WDESTAGDRQ PRVSLWEIEP 360 LTTFPMYPSL FPLRLKQPWY TGVSSLSDYK LDEGNACMLL RGSPGEGLRS LNFQSPAIGP 420 WVPQQVQTQL GNIQQYQAMD ASSFAVGGMD SLKQQLLSFQ QPFQFPQQLN LTNSLLQQHI 480 LQQAHNQQII NAQSQCILQS QSSVNPNQQL QQPYGGQQKQ KVPQQQTYSE SFQIPNDNVE 540 QHQLPLSSPM QKSVFPDYGM NFSSVPAPGC MQNLSVTGFI ESNANNFNFP RPVQSMLSEQ 600 HQQKWDSQLA LAKVSHFDNT VSLQPFPGKH GSRDSEICAA VTQSNSIFGV NFGSSSLLGN 660 AVPDLVHANT ADNIGSNVPF ASSYIQNSLS NSLDESSSVL RHTDEVDPSI KTYVKVCKSG 720 SVGRSLDITQ FSNYNELRRA LGQMFGIEGQ LEDPLRSGWQ LVFVDRENDV LLLGDDPWES 780 FVNSVWYIKI LSPEDVQNMG KLGLEHS

Sequence ? help Back to Top

Protein Sequence Length: 807 aa Download sequence

MKLSTVGGVV QQDAEGGKKR CLNSELWHAC AGPLVCLPNV GTRVVYFPQG HSEQVAASTN  60
KEVEGHIPNY PNLPPQLICQ LHDVTMHADA ETDEVYAQMT LQPLNPQELK DAYLPSEMGL  120
PSKQPMNHFC KTLTASDTST HGGFSVPRRS AEKVFPPLDF SQQPPAQELI ARDIHDVEWK  180
FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA NRPQNAVPSS  240
VISSDSMHIG LLAAAAHAAA TNSRFTIFYH PRACPSEFVI PLSKYVRAVF HTRISVGMRF  300
RMLFETEESS VRRYMGTITG IGDLDPVRWA NSHWRSVKVN WDESTAGDRQ PRVSLWEIEP  360
LTTFPMYPSL FPLRLKQPWY TGVSSLSDYK LDEGNACMLL RGSPGEGLRS LNFQSPAIGP  420
WVPQQVQTQL GNIQQYQAMD ASSFAVGGMD SLKQQLLSFQ QPFQFPQQLN LTNSLLQQHI  480
LQQAHNQQII NAQSQCILQS QSSVNPNQQL QQPYGGQQKQ KVPQQQTYSE SFQIPNDNVE  540
QHQLPLSSPM QKSVFPDYGM NFSSVPAPGC MQNLSVTGFI ESNANNFNFP RPVQSMLSEQ  600
HQQKWDSQLA LAKVSHFDNT VSLQPFPGKH GSRDSEICAA VTQSNSIFGV NFGSSSLLGN  660
AVPDLVHANT ADNIGSNVPF ASSYIQNSLS NSLDESSSVL RHTDEVDPSI KTYVKVCKSG  720
SVGRSLDITQ FSNYNELRRA LGQMFGIEGQ LEDPLRSGWQ LVFVDRENDV LLLGDDPWES  780
FVNSVWYIKI LSPEDVQNMG KLGLEHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37020.2	0.0	ARF family protein