PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA66027.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family ARF
Protein Properties Length: 852aa    MW: 94717.8 Da    PI: 6.5373
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA66027.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3758.5e-24127228199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l
  PKA66027.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHENEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNENNQL 221
                 99*****************************8544444..48************************************************..7888889 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++++r+
  PKA66027.1 222 LLGIRRA 228
                 ****997 PP
2Auxin_resp120.11.7e-39253336183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW nS+Wrs+k
  PKA66027.1 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWANSHWRSVK 336
                 79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 852 aa     Download sequence    
MRLSSSGVAQ QPQEGEQKCL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNRE  60
IDAQIPNYPN LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKDP YLPTELGTPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHENEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNENNQ LLLGIRRANR PQTVMPSSVL  240
SSDSMHIGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPVRWANS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSPFP LRLKRPWPPG LPSLCVARED DIGLNSSLMW LREANLGTQT LNFQGFGLNP  420
WMQPRLDASM LGLQPDAYQA MSTASIQETR TMDASKQVAS AVLHFQQPQN AITRSSPLLS  480
SHLVQQTQVQ SPQSPQQIIH ENKALNQTQS HFLHHQLQSS QNFQHIQLQQ HQQQPVTEIT  540
SALSHFPTSL SQSLVLPNSP CGQNFSNVNC SPVSAPSLAH LNGILRTFSP EEASQLHFAR  600
TDSMINADIC PSKRLAVEPL LPLATQCEQS LNNQFNLQTN FFQHAVALGQ FPVGECLLNH  660
GAATDPQNHQ LFGAKVDSTT IPFTATNFLN GFETDFPLND TISDSTCVEG SGLLQSPENL  720
GQGNQPNETF VKVCKTGSFG RSLDIAKFSS YSELRRELER MFGLEGLLQD PLRSGWQLVF  780
VDREDDVLLV GDDPWQEFVN NVSCIKILSP QEVQHMGKQG FNLIRPSPIT RLSNGSSFDV  840
SNGIASVGSL DY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein