PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA65928.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

LBD

Protein Properties

Length: 291aa MW: 31165 Da PI: 7.4566

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA65928.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.6	8.8e-43	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC+++Cv+apyfp +qp+kf nvh++FGasnv kll++l++ +reda++sl+yeA+ar++dPvyG+vg i+ lq++l+ql+ +l l+k+ PKA65928.1 7 PCAACKLLRRKCTQGCVFAPYFPPDQPHKFSNVHRVFGASNVAKLLNDLQPAQREDAVNSLAYEADARLQDPVYGCVGYISVLQHRLQQLQRDLFLAKK 105 7********************************************************************************************999988 PP DUF260 100 e 100 e PKA65928.1 106 E 106 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence
MSSSSSPCAA CKLLRRKCTQ GCVFAPYFPP DQPHKFSNVH RVFGASNVAK LLNDLQPAQR 60 EDAVNSLAYE ADARLQDPVY GCVGYISVLQ HRLQQLQRDL FLAKKELSAY IGPAALGPIF 120 PQFHGGPISP AAAAAAAAAA AHPAIPVQGM GLGLGANLPS ASSSPAMLRD HYHHHQSQQE 180 IEAAQQLAAA VAAAREQEIM LRSIEQQQEM ARLISGGGNV VGVLPPPPPA VQAPNISGFE 240 GSYIAQQQQQ QQQQNEVIKF EETHLHHHHH QRKGSDDERS GGGPPPSRSS S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	1e-54	LBD family protein