PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PKA65669.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 279aa MW: 31525.2 Da PI: 4.6976 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.7 | 2.7e-18 | 18 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT +Ed ll ++++ +G g+W++ ar+ g++Rt+k+c++rw++yl PKA65669.1 18 RGPWTSDEDFLLTNYIAIHGEGRWNSLARCAGLNRTGKSCRLRWLNYL 65 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 44.4 | 3.8e-14 | 71 | 114 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+ E++l++ + ++G++ W++Ia++++ gRt++++k++w++ PKA65669.1 71 RGNITPAEQLLIIVLQSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 114 7999******************.*********.***********96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 279 aa Download sequence |
MDMGELRIHS EEEIEPRRGP WTSDEDFLLT NYIAIHGEGR WNSLARCAGL NRTGKSCRLR 60 WLNYLRPDVR RGNITPAEQL LIIVLQSRWG NRWSKIAQYL PGRTDNEIKN YWRTRVQKHA 120 KQLRCDVNSK QFKDALRYLW LPRLIERIAA DNSAAEAADC GDLAGGDQTF SGGNNVDVIP 180 LLEESGRESS SSSSVGSTSL GCSTDVTTGS PANAVSGGCE IMQDFWPPET GCEWWREPVM 240 PSPGEYDYDG GLMPEPEQLW GGEMNDSLWS VERIWQLQQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G06490.1 | 1e-77 | MYB family protein |