PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA65439.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family CO-like
Protein Properties Length: 318aa    MW: 33573.7 Da    PI: 6.7406
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA65439.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.54.7e-071759439
    zf-B_box  4 rkCpeHee.kelqlfCedCqqllCedClleeHkg.......Htv 39
                r+C+ ++   ++ lfC+ +  +lC +C    H g       H++
  PKA65439.1 17 RTCDGCKGaAPAALFCRADAAFLCGTCDGRVH-GanklasrHER 59
                79*****8688****************99999.44666666765 PP
2zf-B_box23.11.5e-0760102339
    zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 
                  + C+ +e+ ++   C+ +   lC  C   +H+       H +
  PKA65439.1  60 VWLCEVCEQSPAAVTCKADAAVLCVACDADIHSAnslasrHHR 102
                 689*****************************65778888554 PP
3CCT69.96.6e-24247290144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 Rea+++RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++
  PKA65439.1 247 REARVMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRT 290
                 9*****************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    
MGCEAGAEGT YWGLGARTCD GCKGAAPAAL FCRADAAFLC GTCDGRVHGA NKLASRHERV  60
WLCEVCEQSP AAVTCKADAA VLCVACDADI HSANSLASRH HRLPVVPFYE CPAAVPGPAA  120
GGLGSSLFDE DADGGDGDGS WLLRAPAKNP PPEVVKSTDC IYTEVDPYLD LEYASSQDAG  180
MFQADSVVPA GGGCPANVVG FDFARSKPLY SSYAISHSVS SSEVGVVPDG GGRSSASSAA  240
AVAAMDREAR VMRYREKRKN RRFEKTIRYA SRKAYAETRP RIKGRFAKRT EVERDVSQIY  300
SPAVLIAADP SYGVVPSF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.19e-63CO-like family protein